RNA id: XM_039804216.1


Basic Information

Item Value
RNA id XM_039804216.1
length 3172
RNA type mRNA
GC content 0.52
exon number 7
gene id si:dkey-112e17.1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5421621 ~ 5445464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGGGAAGCAGAGGAGCGGGATACGGTTCACTGTGCGTCGCATTAAAAAGGAACAATTAGAGGAAAATGAGTTGTGTTACGTCGCTTGGGGCGCATGTTTTTATGACAACATATCTACTCTTCGTGATGGGATGCGTTGCACAGAAAGTATACTTTGACTGTGGTGCCAGGGTGGATGTGGTTGATGTCCAAGGCCTCATTCTGTCCCCTGGCTTCCCCTACAACTACTCCTCTGGGACACACTGCGTTTGGCAGTTCTTTGTGCCTGTCGATTACCAGCTTATTCTGGAGATATTTGACTTTGAcgtgtttgaaagccatgattcCGCTGCACAGTACTCTGCTATCTCTAATTTtgaagaggaggagacagacGAAGAGGTGACTTTCGATCCTGGCAGCTTGGCGGCAGATGAAACGTCATTAGCAGCTGAAGATCCCGCGGTTCAGAGTGTAGGGGACGTCACAAAGACTCAGCAGTCCTTCCAAGACGGCGAGGTCAAGCAAGTAGTGGTCCAAGAGCAGTCCACAAAGATGGAGATTGCCAAAGTCTCAAATTCTGCCAAAAGATCCACAGACGCCTCCTCTGGCCTATCTTCGccgccccctccctctctcctcctcctaccTGGGGCTGTGCCTCCAGGAGACAAGGCTGTCAACTCTGCCTCCTCATCTCACCTCAGGGGAGACCTCAGCCCCACTTCTAACCCGAGCACAGTCGCGGAGGAGACCACCCTTTCCTCGCTACACCCCACTGACACTCCAGCTGTGAGCCCCGAAAGCCAGCACTCGGTGCTGGACGCCTGCCCCCACGATGTCCTCTACATCTCCGACCTCATCACCTTCTCCTCCAGGTTCTGCGGGTCCAACCGGCCTCCCAGCAGCCAGCTGGTGTTCGGCTCCAGCCAGGAGATGGTGGAGGTCATCATGGAGCTCATCACCACCACCCACTGGGGCCGCGGCTTCGCTCTTCTCTTCCACTACCACAACCTGACCGAGCCAGGGGGGGGGCACCGGGCCTCTGCTCCTACAGCCAGCAAGGTAGACTCTTTGCTGGCTGCTGTGAGCGGAGCTGCCTTCTTCGCAATGATACTCACAATTGCCCTCTGCATCGTTTTCAGACCCAAACTGTGTCCAAAAAGAGCCAGCTCCTGTGCATCCAGCAACTCTGAGGTGCCGGAGGGGGTCCAGAACACCGGGGCTGAGGTCAGCGAGCTGCAGCTGATGGCTGAGAATCAGACCGACCTGGAAGCGACTACAGAGCAGGACAACAACAACGACAGCCCGCCACACTCAGTCAGTGCTGGCGGGGACGTTTCCCAGAGTGCAGAGGTGGACCTGTCGTGCAGCGGTTTGACTGAACTCGACCTTGGTGCAGATGAGGTTTTCATTGTATCTTCAGCTCCGAGCTCAAGCAGGCTACCTTTCTCACCTCACACGCGGGAGAGGTTTCTGCGGCACAGTGACACCGGCCCCAGCCCTGCAAGTGACTGGCCCTCACCAGACCCCACCACCTCACCCACTGGCACCAGGTCCACCAAGGACAGCAGCGGTGGCTTAGCCAGGCCGAGAGCGTGGAGCGTACGCACCTTCCAGGACTTCCTCCCTCCGCTGCCGCAGCTGCATAAGAAGTGGTGCAGCTGGAACTCCAGCAGTCCCTTCACCAAGCTGGTGGATAGCGCTCCATCCAGTTTGGTAGCTGACTGCAGAGGGGATAACGGCAGGAGGGTCTTCTCTGATGCTCACCTGGACGCTGAGGCAGACAACAGCACCATCTCGGACTCCTCCATCAGCAACGCCTCCTACCCGCTTACGCAGGCCGCTCAGAGGCAGCGGCGTCTCAACTCCAATAGCAACCTGCGGCGCTCGCGCTTCACAGGGCCTTGCTTTGGCCTGCTTTCCGGGACGGCAGACACAACGAAGGCCTCCGGGGTTCCTCGTGCCCAGGGCTCCCTCTCAGAACCCAGCGCTGGctcatcttcttcttcctcccagTGTCCGATCGAGAGCAGCCAGGCCGGAAAGAGGCGCGAGTTCCCAGGAGAGAGTGACCACATCAGCGTGCAGGTGTTTGCCATCTCTGAGGAGGAGGACCGGCAGCCCCTGGTCTCAGCTGAGCACCTGGACCAGACCTCTGCCTCGGCCCTGCTGAATGGATTGGCCAAAGGGACATATGAGGGGAAGGGGCCTGCTGTTGGAAACACCAGCCTCAGCCCACAGAGCCAGAGGGCCAGACCAGAGTGGAGGCCGTGGGGGAGCCAGGTGTCAGGAGGGGTCGGCCCACTCCCTTCCAACACACTCCCCATCATGACTGACTCGAGCCAGCCATCTCTCAGTAAGGCCACAGTGCTGCGCAGTGTGACCAACCTGATGGGACCAGACGGGCTTAAAGTTGATGAAAAGAGAAGGGACTCTGGTGGGGCAGTTATGCATTTCTGAACTCTGTTAGTGCCACGTTGTAAAACATATAACCTATTTTAATTTCTGAAATCAACTTTTACAAAATTATTACTACATATACTGTAGCCTCCTGCTGGAAAATATAGTCTACTCACTCtagttgttttatatatatatatatttttttttataagttgTTTGGACAAAGATGGAATATTATGCTGCTTACTATCCCACGCCACTGACTGCTGTGGTattatgtgtttaaaaaaagatgactGACTGCAAACATGAACAAaactaggattttttttttagtgagtACTCCAGAAGCCCCAACTCTAAGGAGCACTTTTTAACCAGATTTATTAACCAGTTTGATGCTATTCAGTGAGTTATAATACTCCCAACCATTGCACTTTGCTTTCAATAGCTCATTcattgtagattttgttctGCCATGTGCCAGCTTTCTGCTTTTTCCTTCCCGTGGTTCTTCATGTGGTCATATTTTAGCACAAGCTAACAAATGCTTATACAATTACTTATTACCCAAAAGTGTTCTGAAGAGCATAGAACATACAATAATATTAATGTTGCAACAGTGTACGCATACTGGATTATAAAAGGGAAatcaaaataaagtaaaagcaTATAGAGTACTAATATTCACTATTGTTTAGTATAAAGAGAGAACTAGCGATCACACTAGTATTTAAAATGAGTTAAGAATTAATGTAAAGTTTAAATAAAGGCTATGTCAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79692 lncRNA downstream 415958 5004966 ~ 5005663 (-) False G59314
TU79693 lncRNA downstream 415958 5004966 ~ 5005663 (-) False G59314
TU79694 lncRNA downstream 415958 5004966 ~ 5005663 (-) True G59314
TU79696 lncRNA downstream 416278 5004966 ~ 5005343 (-) False G59314
TU79690 lncRNA downstream 472098 4949271 ~ 4949523 (-) True G59312
TU79783 lncRNA upstream 21925 5467335 ~ 5515364 (-) True G59388
TU79804 lncRNA upstream 144163 5589573 ~ 5591810 (-) True LOC120561494
XR_005639428.1 lncRNA upstream 183706 5629116 ~ 5633186 (-) True LOC120560122
TU79818 lncRNA upstream 183713 5629123 ~ 5630066 (-) False LOC120560122
TU79871 lncRNA upstream 185340 5630750 ~ 5631797 (-) True G59437
XM_039804076.1 mRNA downstream 554646 4760116 ~ 4866975 (-) True galnt9
XM_039804077.1 mRNA downstream 639910 4760116 ~ 4781711 (-) False galnt9
XM_039804080.1 mRNA downstream 640053 4760116 ~ 4781568 (-) False galnt9
XM_039804078.1 mRNA downstream 640194 4760116 ~ 4781427 (-) False galnt9
XM_039804079.1 mRNA downstream 640202 4760116 ~ 4781419 (-) False galnt9
XM_039802580.1 mRNA upstream 43346 5488756 ~ 5498896 (-) False pgam5
XM_039802579.1 mRNA upstream 43346 5488756 ~ 5498896 (-) False pgam5
XM_039802577.1 mRNA upstream 43346 5488756 ~ 5498895 (-) False pgam5
XM_039802576.1 mRNA upstream 43346 5488756 ~ 5498895 (-) True pgam5
XM_039802585.1 mRNA upstream 145164 5590574 ~ 5594904 (-) True ranbp1
TU79521 other downstream 985305 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 986553 4432844 ~ 4435068 (-) False LOC120560375
TU79518 other downstream 986553 4433125 ~ 4435068 (-) False LOC120560375
TU79517 other downstream 991580 4424190 ~ 4430041 (-) False sub1b
TU79274 other downstream 1732283 3688629 ~ 3689338 (-) True G58994
XR_005639605.1 other upstream 20813 5466223 ~ 5466437 (-) True LOC120561493
XR_005639606.1 other upstream 146172 5591582 ~ 5591708 (-) False LOC120561494
TU79960 other upstream 980796 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 980796 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 980840 6426250 ~ 6426786 (-) False G59521

Expression Profile