RNA id: XM_039804220.1


Basic Information

Item Value
RNA id XM_039804220.1
length 3840
RNA type mRNA
GC content 0.44
exon number 11
gene id pbx3b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 532813 ~ 593805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACCAAGGCTTACAGGGGACTATGCAGTTCTACATCAAACTGTATAAAAACTCTCATTATGCATTTGCCTGTGTTGTTGCAGGCCTAAATCTTTATTATTGGTATAGAATATGCACATAGCTGCACGTGCACGCGTGAGGAAACGAGGATACCCAGCTGCCGCTGCtgcaagaaagagagaggggactcTGCCGTGCTTTCATCAATATAATCACCATCCTAAGTACTAGCtcttaacattttgtttttcggTGTTCAGGCGAGAAGTGACAAGAATATAGACCCCTCCTCTGCAGGGCGGAGCGTGCATTTTCATTTcgtattttgtatattttttttttcctttttttttctaccccTGTTCCTTGCTCTGACACGTCTGCACTGAGTGAGTGGCATTGGCACACTGTCAATCGCTCACTACCGCTGCCAtcaaacaacataaaacacacacaggcagaggcTGGAGCTCATAAATTTCAGCAGGGGCAAGATATTTTTTGCGCATCGCCTTTATATACAGCGCTGTGTCCTAATTAATTTCTTCTCgtggttgatttttttttttttttttttaaacagaaatctcccaacttttttttgtacatttcatattttttttatagtcaCATTTGGACACCTTACGCCGCAGATTGTGTattaattttttctttctttttacaaaaaaagaatactGTCAGTTGTCGCGGGAACCATTTCTGCACATTTATAGTTGGCAACACCtgcaagcttttttttttatttgtttacacgCTTCTACATTGGATATTTTTTGTTGCCGTTGCTTCACTCGGACGATTTGGACATTTTGGAGAAGGAATGCGCCGGGAATCCCATGAAGAGCGCTAATAAATGAGAGATCACCAAGGAGCGTTTCTGTCTACACCAGCCGTCAAATCCCAGAGAAAAGACAGATTGGCATGAGGATCAGTGCGGGATACGATGGACCGTCAATTTTGACAAAGAAGTgttaagaagaagaagcaagATTTATGCATTTTTCTACAAACACAGTCACGCGTTTTGGCACTTTGGACCGCGCGTAAAAAAGCGAGAGGACAGCGAGAACTTGGGACATAAGATTTACGCtaaaacattttcacatcaCTGCTAtaggcttcttctttttttaaacgtgtGTGCTCTGTGTCGCTGAAGAATCACAGCCGTGCATCCCTCTTGTCTGCGGCACATGCTATAACCGATTTCGTATATGAGTTTTTCAATTTGTGTGGCTCAGTGCACAGACTCTTTAGCGGCTACTATGGACGATCAAGCCCGGATCATGCAGTCGATCGGCGGTGTCAGTCTGGCTGGCCACTCGGTACAAGGAGGCATGGCACTGCCGCCTCCACATGGACACGATGGGACAGACGGAGACGGAAGAAAACAAGACATTGGTGACATTCTCCATCAAATAATGACCATAACTGATCAAAGTCTGGACGAGGCGCAAGCAAAGAAACATGGACTGAACTGTCACAGAATGAAACCAGCACTCTTCAGCGTTCTCTGTGAAATCAAAGAAAAGACAGGTCTCAGCATCCGTGGTGCGCAGGAGGAGGACCCCCCAGACCCCCAGCTCATGCGTTTAGACAATATGCTGCTGGCAGAAGGCGTGGCGGGACCAGAGAAAGGCGGCGGATCTGCCGCCGCCGCAGCCGCAGCCGCAGCCTCTGGCGGGGCGGCCGACAACTCCATCGAACATTCTGACTACAGAGCCAAACTCACCCAGATCAGACAGATCTACCATACGGAGCTGGAGAAATACGAACAGGCATGTAACGAATTCACCACCCATGTGATGAACCTGCTGCGGGAACAGTCTCGCACGCGGCCCATTTCTCCCAAAGAGATTGAGCGCATGGTGGGAATCATCCACCGTAAATTCAGCTCCATCCAGATGCAACTGAAACAGAGCACCTGTGAGGCTGTCATGATCCTGCGCTCCAGATTCCTTGATGCCAGGCGGAAAAGGAGAAACTTCAGCAAGCAGGCGACGGAAATCTTGAACGAATATTTCTACTCGCACCTCAGCAACCCGTATCCGAGCGAGGAGGCTAAGGAGGAGCTGGCCAAGAAGTGCAGCATCACAGTTTCCCAGGGGGTGGGAAGCACCATCACAGTATCACAGGTATCCAACTGGTTTGGCAACAAAAGGATCCGGTACAAGAAAAATATCGGCAAGTTTCAGGAAGAAGCCAACCTGTATGCCGCCAAGACTGCTGTAAATGCAGCACACGCTGCAGCCGCTGCAGTGCAGAACAGCCAGGCCAACTCCCCTACCACACCTAACTCCGGATTCCAGATGAAAGATGAGGAGTTTCAGCTGGATTCTGCAGAGAGCAAAAACACTCTTTTAACCAACATGTTTACTGGTTCTTCAGGTTCTTTTAACCTCCCAAACTCTGGGGACATGTTCTTGAGCATGCAGAGTCTGAATGGGGATTCTTACCAAGGGGCACAAGTCGGAGCCAATGTACAGTCACAGGTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGCTATTGGGGGGAACACGATGTATAGTCCACACGGCTTAAATGCTAATGGGGGATGGCAAGATGCAGCGACTCCGTCTTCTGTGATATCTCCGACAGAAGGACCCGGAAGTGTGCACTCCGATACCTCGAATTGATCCGCTGTTAATGCATCTTCTCCTCAAAGCTGGGCATGGGACTATTTTCGCTGGCTGACCAACTGCAgaggatacacacacataaaaaaaacacttttcacaacagattgttttttttcccctgtacTTTAACATTTCCCCCCCATGCACCAAGCCAAACACACCCTCCTACATTAACACCCGGTGTTCTCCTGGTCGTTCggtgtttttctttctgtctccataAATCCGACGTGATCTCCATGCTCTTATTTGTATGTCGTAGGGgtaagcacacacaaacagaaaacaaacttTCAGGATAATTAGCTCCTCCAAACTTAAAATACCGGATGACACTTGCGCATTTAATGTGACATTTTAAACGCCTATTTGTTTGATTCTTGATTTAATTACCACTTGCCATTTTGATAATTGGGTTCTCTTTCAGTTCTTACAATACATAGATTAAAGCAGCTGTTTCTTTGactgtaatgtgcttgcaaTCTTGTCCAGCAACTCAACAATGCTACTGTTGACAGCTCAATGGCAGCTTTGTAGTTACTTTCAAGATTTATTTTGCCTTACAGCCGTATACATTAGTACAAGGAAATGGCTTCAAACTCTGGAACATAAAGAAGTGTAATTGATTGCTTGACTATAACATGACACCATTCCATATTTTATAATTTGATGTTTagtatgtaaatatgtaaacattttcttttttttttgtactgcttATCAACAAATAATACACAGTATATCATTCCTTCATGGCGCACAGGAGCAGGCCCCGTTACACAGGAAAAGTTGTACATAATATAGCTTAAGAGTAATTATACATCCCACCAATCAAAACACAGCTTTATTACCTCATTCAAATTCATAAAAAGAACAATAATTTCCAATTTGTCTGTAGCTTAGAGTGCTCACTTACTACCTCTAAACAATATCACCACCATAGTTTCTTTTGCCCTTATTTAATGTTTTCCTCTAGTTACTTTAAAGACATCTTGTAACACTGTAAACTCTTCATCCTCTATGTAATCTAATGtatattttaatcttttaataaAATGCCGTTGCTGTACCGCaacttaaaatgacaaaaataaaaaaatgaaaatgataacAATATTAATACCGTGAAAAAGAGATGGGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78020 lncRNA upstream 273116 257568 ~ 259697 (+) True G58024
TU78015 lncRNA upstream 280741 245891 ~ 252072 (+) True G58021
XR_005639514.1 lncRNA upstream 320430 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA upstream 320430 210756 ~ 212383 (+) False LOC120560799
TU77996 lncRNA upstream 322137 209281 ~ 210676 (+) True G58011
TU78181 lncRNA downstream 242774 836579 ~ 837861 (+) False lmx1bb
TU78179 lncRNA downstream 285449 879254 ~ 882251 (+) True G58151
TU78184 lncRNA downstream 298292 892097 ~ 892439 (+) True G58156
TU78185 lncRNA downstream 305088 898893 ~ 899506 (+) True G58157
TU78257 lncRNA downstream 459210 1053015 ~ 1053413 (+) True G58209
XM_039803357.1 mRNA upstream 100184 394093 ~ 432629 (+) False gapvd1
XM_039802122.1 mRNA downstream 138892 732697 ~ 773213 (+) True mvb12bb
XM_039804573.1 mRNA downstream 195600 789405 ~ 837396 (+) True lmx1bb
XM_039803888.1 mRNA downstream 276226 870031 ~ 877817 (+) True zbtb34
XM_039803459.1 mRNA downstream 435452 1029257 ~ 1052283 (+) False adamts13
XM_039803458.1 mRNA downstream 435453 1029258 ~ 1052283 (+) True adamts13
TU78000 other upstream 320443 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2284596 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3523474 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3830336 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3838366 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 3838863 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile