RNA id: XM_039804233.1


Basic Information

Item Value
RNA id XM_039804233.1
length 3318
RNA type mRNA
GC content 0.54
exon number 15
gene id cdca2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6631591 ~ 6648978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAAGTTAGTTCCTCCGAACAATACAGCTTTTAAGTTAGTAtcgacttttttttaacaatgtccGTCGTTGCTACCCATATTTGACATTTGTATACAAGACTACATATTACACCGCGTGTTTTTGAAGTTGTAacagtgtttgtttacaagCATTCATTACGTTTTCGCGGAGGGATCCACACACAGCCGCTGGGTCAGGCGTGGAGCATAATTTGAATCGCTCTCTGCTCCTTATTTTGTCGTTTGTGTTCTCATGTTTTTAAGACCTTAATGCCTTTTTTACGACACAGTAGTCtatacatgtttgttttttttatatatatatatatatatatatatatctgtttcAACGGGAGACAGCCCTTTTATTTGCCTTAAATGTATAAGATGGCTACCGTGATGAACACTGCTAGCACTGAGGGAGATCAGAAGGAGAAAATGTTGTCCCCCTCAGAAGAGGACGCCCCTCCTGTTTTTATTGATCCCTCAGACCCCCTGAATTTCTCCGAGCTTACACCTTGTCAGTTTGGCATCTCTGTCCAGAGTTTTATTCCAGGATCAGCCAACAGCAAAGATAAGTCTCGTCTAGCACAAATAAAAAAGGCAAGGCGGAAGTCCAGCGTTGGTGTCCGAGGCTCCCCAGAGACAAACTCCCTCATTCGCTTCATGGCACAACAGAGGATGAAGACTCCACCCAGCTTTAAAACTCCAGAGCTTGTCAGAGGTAGCCCCTTTCCCCGGGTCGCCTCCACGCTGAGGCAGAAGATGGCCTCCTTCCAGAGCCTGATGGATGTGGAAGAGAGTGAGGTCTGTGATCCGATGCCAAGGCAGGACGACAACGCTGGAGGATGCATCAAGACAAGAGATTATCTGTCTGaTGGGCACAGCCATAATGGAGGGAAGGAGAACTACCCACCAATGATGACGTCCGTACCCAGCAAGAGGCGGCGCCTGGGCCCCCGGGAAGGGTGTGAGGTTGAGATTAGAGAGGGCAGCACTCCTATCTCCAACTTCAGTCTGAAGGAGCAGGAGGAGGAAGAAGAACCAGTGACACGAGGACCTCTGCCATCCACTGAGACCGTGGAAGAGGCCAAAGCCGTGCTTATATCCCCAACCCTTCACACTGCTCTTGAGCTCCAAGGCTGTTCCCCTGCTAAGAACCAACAGGACAGTCTCTTTGAACTCCAGAGCCTCGGCCGACCACCAcccgatgatgatgatgctgcagCTGCTTCACCAGCTGCAGGATCGTCATCCCCCTTCCACATCCTCTCTGTCCCCTCTTTGCTGGAGATGAAGcccacagGAGAGGATGACTCCACCGGGACGTCCACGgctaagaaaacaaaaaagaggGTGCGCTTTGGAGGTCCGCTCTCTCCTGAGTTCTTTGATAAGAACCTGCCCCCCAGCACACCGCTACAGAAGGGGGGCACGCCGGGCCGGGCACCCACACCAGGCGGGAGCTTACAGCCGCGCCCAGTGCTGAAGACGCCGCAGAGGAGTGAATCCCAAACGCCGCGAGCTCAGCCAGATCCCAGCAGCCCCTCTGGGTTTGGTGCCTCACCTACACTTGCAATGCCCCGCAACCGCAGAATGCCGTCTGTGGGAGAGGACGGTGAAGAGAAGGATGGAAAGATTGTTTTCCCTTCGATGGAGGAGATTGACTCGGCGGTGACGAGAGATACAGAATGTACGTGGGACCCTCGGCCGTTGAATTTAAACACTGCCTTCAGTGAGGAGTCTCTCTCACAGATTCTGACAGAGTCTGAGACTAAGCCCAGCACCACCTCCCAGATGGATGCCCTGGATGAGCCTACATCCTTGCCTGAGAAGCAACATGAAGCGGGTGTGGAAGCTCCGGCCCAATCTAGAAACCGAAGGAAGAAAAAGCCAGGACCAGAGCATGCATCCAGCGGTGAGGCTCCAGCTCACTCCGGCAGTCTAAAGAGAAAGCCAGAGGAGAGCGAGCCTGGGAAGAGGTCGGCGCGATCAGCTGCTAAGTCGGCCGCTGGGAAGATGAAGATGACCTCCACGGCGACCCGGCGGTGGAGCAGGGGCGTGGACCGCTCCCTGTACGGCTCGCGGGCGTTCGCCTCCAAGAACCCCAACCTGAGTCCCATCACTGAGACGTTGTCCCTCACCAGCCAGTCTCCAGCAGCGCGGCACACTCTCTCTACCAGCTGCACAGGCCCAAATCACGAGACCCACTTGAACCCTGAGATGGCCAGCGACGCTCAAGCGATCGGTCACCTTACTGTGACTAATGCCTTAAAAGATCCTTCAGAAGATTCTGTCACATCTCCCAACTCCGTTTTAGAAAGCCCCACGGGGGACGGCAGGGGGCCGGCAGGGCCGAGGGCCAGAGGGAGAGCGCTGCAGAAAAGGAAGGTCGGTGTTGCTGCTGATAGCCTGTTCTGTGAGGAGACTGTGGACCAGACTGGAGTAAAGACAGAGGAGTCCAGTGAAGACCAAACCACTACAAACCTCCAGGCATCAAGGGCAACCCCTCTGAACCCCACCGAACCTGAACGGGGACAAGTCAACGCTGAAGATATTGCCCAGACCTCTGCCGGTACACACTGCACAGACTCCGATGGGAAATTACAATGCCATGGCAGTCTGGACGCACCCTCCTCCGACTGCCCACCTTTGGCTTTCACTTTGAGTCTGCCGGCACAGAGAAAAGCCAAGCGGGGCAGGAGGAGCTCGGTAAACCGCTCAGTGCTACAGGAGCAGGGGCACCGGGCAGAGGAGCACCCAACCAGCCATGAAGTGGAGGCGAAGGGACGGGCAGACCAAGCAGCTAGCCAGCAGGAAAACATCATGCCAAGCTCGGATAGCCAGGAGGTGGGGGGGGTAGCCGGTGTGGACCTCGCCCCGTGGCAAGCTGACTTTAATTTTGAGGATGTGTTCCGGCCTGTCGCCACTAGAGGGCAGCGCTCAGTACGCCGCAGCCTGAGGAACAAGTGCAGTGCAGAGGAAAGCAGCAACAGTGCGGGTCTCGCCTGGCTGCCTTGGACCTCCCCCGAGTCCAACTCGGAGGCGCGCAGGAAGACCCGCGGCCGGCGGCTCTCTGCGGCTCCACCTGTCAAACTTCCTCTCCCCGAGGAGACACAAGACAGCGCTTCATGAGACTGTAACCTGACGACATGAACTGAGATTAAATGGGATAACTAATGCATTCATCGCACCTTCATACATACCTACCCTgttttcttaaagtgctcatattatgctcattttcaggttcataattgtatttagaggttatatcagaataggttaacgtggtttagttttcaaaaaacgccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79954 lncRNA upstream 296800 6334494 ~ 6334791 (+) True G59516
TU79953 lncRNA upstream 297377 6333979 ~ 6334214 (+) True G59515
TU79944 lncRNA upstream 383233 6248069 ~ 6248358 (+) True G59506
TU79942 lncRNA upstream 410735 6220582 ~ 6220856 (+) True G59504
TU79940 lncRNA upstream 439313 6192078 ~ 6192278 (+) True G59502
TU79990 lncRNA downstream 91686 6740664 ~ 6740928 (+) True G59544
TU79989 lncRNA downstream 92063 6741041 ~ 6741289 (+) True G59543
TU80085 lncRNA downstream 166270 6815248 ~ 6815506 (+) True G59627
TU80153 lncRNA downstream 360668 7009646 ~ 7050772 (+) False zgc:65851
TU80156 lncRNA downstream 378320 7027298 ~ 7029309 (+) True G59687
XM_039803237.1 mRNA upstream 4499 6498113 ~ 6627092 (+) True sema4c
XM_039803238.1 mRNA upstream 4499 6498113 ~ 6627092 (+) False sema4c
XM_039803239.1 mRNA upstream 4499 6554672 ~ 6627092 (+) False sema4c
XM_039803240.1 mRNA upstream 5948 6554672 ~ 6625643 (+) False sema4c
XM_039804197.1 mRNA upstream 589927 6010518 ~ 6041664 (+) True gnb1l
XM_039803461.1 mRNA downstream 25886 6674864 ~ 6718884 (+) True kat6a
XM_039803943.1 mRNA downstream 78801 6727779 ~ 6738309 (+) True ap3m2
XM_039802400.1 mRNA downstream 103310 6752288 ~ 6796697 (+) False tet3
XM_039802403.1 mRNA downstream 111134 6760112 ~ 6796697 (+) False tet3
XM_039802406.1 mRNA downstream 111134 6760112 ~ 6796697 (+) False tet3
TU79733 other upstream 1133837 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 1178097 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 1178097 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 1280460 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 2100426 4530110 ~ 4531165 (+) False mrpl41
TU79987 other downstream 25939 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 320155 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 951115 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 976829 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1035667 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile