RNA id: XR_005639576.1


Basic Information

Item Value
RNA id XR_005639576.1
length 4181
RNA type transcript
GC content 0.40
exon number 11
gene id LOC120561236
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17598088 ~ 17605120 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACAACAGATATAAAAAGTGCGGAGCAGCTGTTCAGGGTTTCCAAGCCTTGACTTTCCTCCTGGTTTTACAGGAGATTTGGATTTTTCTCTGAGGAAAATGACCATCAAAAACTTTTCAATTGAATATGATGCCATCAACGACAAAAACACCTTCTCAAATGGAGATATCATTAATGGTAGAATTATCGTGGAGGTTTCTAAGGAAACTAAAATCCAGTCGCTTGTTTTTATAGCAAAGGGAAAAGCTCGGGTCTGCTGGTCTGAACATTACGGGCAAGATCACAATCATGTGTACTGGTCTAATGAGAAATATTATGATGTCAAACATCATATTTTGAGAGAGGCAAGACAAGATGGCACTGAAGTCATTGGTAAAGGAAGACATGCATTTCCCTTTTCCTTTAATATTCCTGACAGAAAAATCCCATCATCTTTCAAATCCTCCATAGGCAACATTGTTCATAAATTGAAGGCAGAGCTTCATCAATCAATGAAGCTGACAAAAAAGGTTAAAACCCACTTCACATTTGTGTCCAAAGCAGACATGGATACTCCTGGACTTATGGAACCTCAGAATGGTTGCAAGGATAAATCTGTCAGCGTTTTTGGCTCTGGAAACATATCCATGGATGTTCACACCAAGCAGATGGGATACAAACAAGGCGAGGCTCTCGGAGTCACAGTTGAAGTCAGCAACCACTCAAATCGTTCAGCGAAGCCCAAACTCGAACTGTATAAGAAGGTGAGTTTCTTTGCCCAGGGTCACAGGAGAGTTCACAAAGAGAAGATCATTAAGGAGATGAGTGAGGCTGTTGTATCCTCTGGGAAAGAGACTGTGACCAAGGTGATGTCCATCCCCACGGAGCTACCTCCCTCCATCTTGAACTGCTCCATCATCAAGCTGGAATACAGGCTGAGGATCTATCTACAGGTCAAATTTGCTTCAGACCCAGAGATCAAACTCCCTATAGTCATCCTACCTTCCTTTGAGGTTCCTGCTATGAAaccacctgctgctgctggctttgGATTTAAAGCATTTGGGGACCCGGACCAAGCACCCTGGAGCATGGCATCACAAGCACAAGCAGCACCCCAAGAAGTGGATCCCCCACCTCCGTATGAAGCATGTGCAACGTACCCTAGCAAATATGCGAGTGCACTTTAAATACGCCACTGTTTTAGCATTGCACTTTGCACAGATTAATCACAATGCAACTTGAGTACCATTAGTCATTAGTAGCttcatttgatttttgttttacattatgATGCAATTCTTTCTTGGGctgaccccaggaagagtagtTGCCACCTTGGTAGTGGCTTATGAGGAtccaaacaaataaatacataaataaaaacttcAGTGCCAAAAGTTAGTTTGGAGATTGCTAATAATAGTAACCATATGATTATTGGTCAGTTGCTAATGTTAATgccaaattgtatttttttattccactGAATTATATTGATGTCCATATGTGGTAATTTTGGTGTTATGTAaatactagtctatatccttcgcgtGCTGCAGGAATTTCCGCCGGAtgaatgtattttctgtttccttccgctttctttgtgttggaattttaaatttggttgattaatgaggactatagttaattgctcctcagatctctgcatggtaaattgagacagctagctagtctatctgtccaatctgagttttctcttgcacgactattttgcagcagctcgGTGTAGAGTTTAGCAACGCCCatgacaattctgattggtttatagaaatgccaataaaccagagcacgttttcctcccatccccgtaAGCTATGTGAAgtaaccagaccctccttcagcacgctttggaggagggtctggcaaagtgagactatgtAAATACTAACTTTTTATCAGCCTGCTTAAACCAATATCACAAGGGCCATGTTGAATAGAACTACTGTTGACTAAACATAGTTACACTGTAATTAGTTTTTTATCAATAGATGGATTCAAAATGGTATACATTATCTCAGTATCTTGAATAGCTATACTTTAGTTTATTTATCATATCAAATATTACAAAAATGAATTGGTTGTATATTTGTACCTGTATGAATTTGCATTTGAACAGTAAATATGCCTCAACTCAAACTTTTGTTTGAGTTAAACTTTTCGTTTCAACTTATTGTTTTATTGATGTCAgtgtaaaagtaaaaattcaaTAATCCAACGGGtaaaatttgacattttaattttattcagATGCTTTTGCGTAGGTAGACAGCACTAAGTTATGGTCCACCGAAATCTTGAATGGGTATTTCCTCTGAATCTGTTAGCAccagaagaaagaaaggaataTGCTCAAAATGCTTAAGTGCATTTCCTTAATATGTGCAAATTTAGCATGCGTGATGCCTGCCTAAATCATCTATATTGTATTCCTGCCAGGTAAAGGTTATGTATTATTCTTTTAATTTACATCAAGCTATCTGAGTTAGACATGTTATTGATAAAGTATGTATTATGTAGTGCTATATTGTGGTTTTTACATTGGTTTAAATAGTATTCACTGAGGAATATAAATGAATGTTCACACGTATAGCATACTGGAATCTTTTGTCTTAGTACATCCATGACGTCAGTCTCAATTTATTTGGCCTAATTTAGCCTGCAAGGCTGCTGGCTAGAGTTACCTGTGGGAAAGGGACACCTGCAGCTCATGATCACGTGGTCATGTGAGACACCACAGATAGCCTCTGGAGAAGTCCACTGCTATAGTGTATATGCCAGCCTTGCTTGATCCTTGCTCATTAGCGAAAGGCCCCACTTCAATACCACCGTGGATCTATTCAAACCGGCTTCCAGTAGATTTTCAGGAATTATTctacaaaaaaagaagcatcGTCATCGTGCGTTCACTCCACAACCTTTGGGACGGTTCTTTGATTCAGTCTTATCATGACTGTAAAGCATATCTCAGTGGATTACAACAAGGTGAATGAACGAGGCACCTTCTCTCCTGGGGACATCCTGTCTGGCAGGGTGACAGTAGTGACCAGCAAGGAAACCAAAGTGCAGTGTTTTTTGGTCAAAGCCAAAGGAAAAGCTAAGGTGACATGGCATCAACAAGAAGGACAAGCCACAGGGATGCACACTGACAAGAAGATATACTTTCATTTTGAACATATTATTCTTCAGGATAAGAACAAAGGAGATGGTTAGTATTGTCACTCTCGTCTaccaaaaaacaaagaaagagagcgcttaaagcttttcaattgaTAGATATTTTATAGTCTGTTAACAAACTGATGAATGTGTATTTAACAGCagtgtttctttttattcttttttataagGTTCAGAAATCATCCGCCCTGGGAGAAATGTGTATCCATTCACCTTTGTGATTCCAAATACAGATATGCCTTCATCTTACGAGGGGAAATGGGGGAAAATTACATACAGTTTGCGAGCACAGCTGACTCAGTCAATCTGGCTTGTCCACAAAACCAAGACTGAGTTCCCTTTTCTGACTAAGTTCCCCTTTGCCTCCAAATCAGAAATGATAATCATTGGACTTAAGGAGCAACAATATGCAACTAGGATTTCATTTTATGGCTCTGCAAAGGTTACGATCAATGTTACCTCAGAAAAAATGGGAGTAAAGCAAGGTGATGCGATAGGAGTCTCTGTAGAGGAGACTCCATACCTGCTGAGACCAGTCAGACCATAACCAAAGTTCTGAGTATCCCTCCACAGCTCCACACTACCTTCTTCAACTGCTGCATGATGAAGCTCGAGTACGGACTCAAGATCACTCTTGATGTCCCTCTGGCAAGAGACTCAGAGATCAAACTTCCTCTGGTCATTCTGTTGGGGTCGCCAAAACCACATCAACAAAAACCAAAGAGATCCATCTGGTTTAGAAAGCTTCCtgcttaaaaaaactaaaatgcattAGATCCAGAGACAGTGGTGTGCATGTGCTGTGCTAGGAGCAACAGGACTCAAAATAACAGTTCAATATAGCAACATTTAAATAAGTCTAAACTACCTCAAGCGCCTGAGAATTCACTGTATGTTCTCttgtccactagatggagaTGTGTGTCACTAAGTAGCATTCCAGTAACAGTTGATATTTTtgagtgtacagtatgtacttaATAAATTCAActactca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83322 lncRNA downstream 21536 17576219 ~ 17576552 (-) True G62231
TU83321 lncRNA downstream 22139 17575641 ~ 17575949 (-) True G62230
TU83289 lncRNA downstream 182742 17414652 ~ 17415346 (-) True G62205
TU83269 lncRNA downstream 512267 17083479 ~ 17085821 (-) True LOC120560425
TU83264 lncRNA downstream 531632 17065836 ~ 17066456 (-) True G62183
TU83447 lncRNA upstream 236599 17841719 ~ 17842452 (-) True G62318
XR_005639419.1 lncRNA upstream 291671 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA upstream 291671 17896791 ~ 17899826 (-) False LOC120560086
TU83469 lncRNA upstream 309806 17914926 ~ 17926955 (-) True G62333
TU83475 lncRNA upstream 326622 17931742 ~ 17933468 (-) True G62339
XM_039803288.1 mRNA downstream 30074 17534483 ~ 17568014 (-) False LOC120560614
XM_039803290.1 mRNA downstream 30074 17541396 ~ 17568014 (-) False LOC120560614
XM_039803287.1 mRNA downstream 30074 17541396 ~ 17568014 (-) True LOC120560614
XM_039803286.1 mRNA downstream 30074 17543082 ~ 17568014 (-) False LOC120560614
XM_039803149.1 mRNA downstream 62920 17482640 ~ 17535168 (-) True LOC120560528
XM_039804267.1 mRNA upstream 10021 17615141 ~ 17618859 (-) False LOC120561237
XM_039804266.1 mRNA upstream 10025 17615145 ~ 17618859 (-) True LOC120561237
XM_039803295.1 mRNA upstream 109416 17714536 ~ 17718413 (-) False f2r
XM_039803294.1 mRNA upstream 109416 17714536 ~ 17718410 (-) True f2r
XM_039803293.1 mRNA upstream 113508 17718628 ~ 17755600 (-) False iqgap2
XR_005639495.1 other downstream 30074 17541396 ~ 17568014 (-) False LOC120560614
TU83293 other downstream 117274 17478306 ~ 17480814 (-) True G62209
TU83278 other downstream 473611 17123996 ~ 17124477 (-) True G62194
TU83120 other downstream 1046913 16548622 ~ 16551175 (-) False LOC120561322
XR_005639516.1 other upstream 254235 17859355 ~ 17895897 (-) False pip5k1bb
unassigned_transcript_262 other upstream 354693 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 688136 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 693781 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 772482 18377602 ~ 18380502 (-) True G62580

Expression Profile