RNA id: XM_039804270.1


Basic Information

Item Value
RNA id XM_039804270.1
length 2213
RNA type mRNA
GC content 0.53
exon number 4
gene id asphd2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2630504 ~ 2634683 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGACGCTGGGTGTCTTCCCTTGTGGAGCGTCGGTATTTACAACAATATTGTCTGTAGCCTATCCGACGCTGCTGTCCAtcccagacagacagggagCCAAACCGTCGCTGGAACAgctttctgattttttttctctgctgtaCGGTGGCTGTCGGCTCCAGTTAGGACTTCTTTTGTGCATTTTGGAGATATTTCCTATAATGTTGGCGAGTGATATCCGTCTACCTTGTGCACTGCAGTGGTGCGCAGCTTCGCCTGGAGAAACACCTGTGcgcctctcctcttcctctccactGGCCACGGTCAGGAATGTTGAGTAGAGAACACATTACCCTAAGGCTGGGCGTCTGTCTGCGTTTGTCTGAAAGAACGAGAGAGGGAGCAGCACCAAATACCGCACAGCCAGACATCATGCAAGGAGAATCCTTCCCTCGTTGTAGAGTGCTGAGATGTTAGGATCAACCAGCGTGTGTGTCGGATCAAATCAGCAGACTGTTTACCAAAGGGGGGGCGATAAGAGCTGCTTGACATTAGACTCACTCACGCCCTGTGTGTGGTTCAAGGCCCCTTTAAATCACGATCAAGAAAAGACGTGTTAACTGATCTCTCAGCAGCACTCTTCCCCCATCCCCGTCAGATTCAGCAATCCAGGAACGAGCCAAGATGGAGTGGTCACTGGACAATGTGAGGGAGATGGTGGCTGGAGGGATGCAGTCTATAAGGGAGTGTGAGATCTGTGCTTTTGCCATAGccatgtgtgtgctgctgctgtttatgtGGTATTGTTACAGGGTGGGCCGGGAGCATGGCTCCAGCCCTCTGCGTGGCAGGTATCTGGCTGGGCCCAGCCGAATTggaggggtggtggggggcTTCATGAGCTCAGACTGCCGTGGCAGGGGGAAAGGAAAGCCTGGATCAATGCTAGAAGAGCAGAACGGCTTCGCTTTCTGCCAGTCGTCGGAGTGCTTCCGATGTACCAGCGCCGGAGAGAGTCTGAACCAGAGGCTCTACCACAGCCTGCAGGATTACGCCAAGCGCTACACCTGGTCAGGTATGGGCAGGGTGCATAAAGGAGTCCGTGATCAAGGCCGATACCTTAACAGCAGACCAACCATCCAGCGGCCAGAGGTCTTCTTCCTCCCAGACCTACCGTCAGCCCCTTTCTTCTCCAGAGAAGTACAGAGACACGACGTGGAGCTACTGGAGCAGAGCTTCCCCGCCCTTATGGCCGAGTTCGAGAGCATCTACCACCAACCTCCAGCACGCAGCGGCTCCTCCCTGCCGCCAGGGTGGAAAGCCAACAACACTCCTCGCGGGCAGTGGTGGACCTACTACCTGGTAAACCAAGGCACCCCTCTGGTTCTCAATGTCAGGAGGTGTCCACGGGCCTGGAGGGTGCTGGGCCAGCTGCGCACCTTCATCGCCAACAACGTGTTCGGAAACGCATGCTTCTCTGTGCTGTCGCCTGGAGCTCTGATCACTGAGCATTACGGTCCGACAAATGTCAGGCTGCGCTGCCACCTGGGTCTCAGAGTGCCCCCTTCATGTGAGCTTGTAGTTGGTGGAGAGCCACAGTGCTGGTCTGAGGGCAGCTGTCTGCTTTTTGATGACTCCTTCCTCCACCGGGCCTTCCACGAGGgCGGCGCAGAGGACGGCCCCAGGGTGGTCTTCATGGTGGACCTCTGGCACCCCAACGTGGCCGCTGCTGAGAGACAAGCCTTGGACTACATTTTTACTCCAGGCCGCTTAGAGGACAAGGAAGGGAAATAGGTGTGAGTGAGAAACCAtgtctgacagagagacagatggcGTTTAGGGAAGTGTCTGTAGGATTGGGGAGCAACTCTTTTTCTGCTTTCAGACCAGCTCACACATTCACTGTGTACATATTCTCCGGCTTATACAGTATCTCTCATAACTCTTCTTAGCAGATGACCAAACATTGGGCCTCTTTTATCAATCATGTTCGTGTTTCAGCCTGTATAGCTGTGTAAAGGACAGCCACGCTTCAAAGTACCACCTTAAATTCTCCAAAACTTAGTAGGGGCACGATTGTTCATGCagccatttcatttttattaatgcGTATTAACACCATGGCAGGGACATTTCAgcttatttgttgttgttttattttgaatcttTGAATGTTCTTTGCATTAAAGATGAACGAATGAGTGACTGAACTGTCAAGCAGTTCCcatcaaa

Function

GO:

id name namespace
GO:0018193 peptidyl-amino acid modification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78788 lncRNA upstream 5152 2624117 ~ 2625352 (+) True G58618
TU78772 lncRNA upstream 99781 2530492 ~ 2530723 (+) True G58603
TU78770 lncRNA upstream 104234 2526052 ~ 2526270 (+) True G58601
TU78768 lncRNA upstream 105937 2524207 ~ 2524567 (+) True G58599
TU78767 lncRNA upstream 106570 2523641 ~ 2523934 (+) True G58598
TU78832 lncRNA downstream 28720 2663403 ~ 2665691 (+) True G58650
TU78833 lncRNA downstream 31135 2665818 ~ 2667041 (+) True G58651
TU78834 lncRNA downstream 32575 2667258 ~ 2667835 (+) True G58652
TU78837 lncRNA downstream 33403 2668086 ~ 2668677 (+) True G58653
TU78858 lncRNA downstream 71130 2705813 ~ 2706139 (+) True G58673
XM_039804278.1 mRNA upstream 13531 2600890 ~ 2616973 (+) True lrrc75ba
XM_039803790.1 mRNA upstream 53454 2560749 ~ 2577050 (+) True anapc5
XM_039802996.1 mRNA upstream 91371 2537954 ~ 2539133 (+) True LOC120560453
XM_039804521.1 mRNA upstream 195562 2365750 ~ 2434942 (+) True LOC120561412
XM_039803595.1 mRNA downstream 5469 2640152 ~ 2654597 (+) False cabp1a
XM_039803600.1 mRNA downstream 9442 2644125 ~ 2654597 (+) False cabp1a
XM_039803596.1 mRNA downstream 12446 2647129 ~ 2654597 (+) False cabp1a
XM_039803598.1 mRNA downstream 12454 2647137 ~ 2654597 (+) False cabp1a
XM_039803597.1 mRNA downstream 13136 2647819 ~ 2654597 (+) False cabp1a
TU78000 other upstream 2418134 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 243718 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1482596 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1789458 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1797488 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1797985 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile