RNA id: XM_039804287.1


Basic Information

Item Value
RNA id XM_039804287.1
length 1760
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120561249
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11573980 ~ 11576354 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAgaataacgtcacccaacatcgcttggagcacctttaactagtcttttttataattaaaatcaATCAAATTTGTGTTTCTGCCTCTTTCTGACAGTTTCCTTATGCATCATCATCAACCTacacaaaaaagatattttaaatgtttatcaGAAAGTATGTCTGATGCCATGTCACCGGGTAAATGCCAACAACTCATTTTATTTCACTTAAATCCACCTGCTATCTACATTATTACTACAGGTTCAATTTAATACAGATAGTGTACAGAATGTtactatatgtatatacagAGTGATGGGAAATGCATAAAATTTATTTTCAACTTGATGTTAAGTTTGTGGTGTACCCAGTTATCAGGGTGCACCATCTTCAGTAATCCTCTTTCTGCCAGTTTCATTATGCATCATCATCAACCTACACAAGCTTATCAAAAAGTTCCATCTGAGTGATCTGTGCCCTTTTGACACAGAATACGCCCGGCAAGCATGACAACATTGAGATCCCGagccttcttcctcctcctcctcctcctcatctccctCCCATCCCTTCTTTATTACAGCTTCTTGGACCAGAAGCTCTATCTGCAGAAATATCATCCAGCTGTTTCTAAAAGAAACATCAGCATCCTGCTGTGGCACTGGCCATTTGGCCGCTCTTACAGGCTTGATGGAGACAAATGCCTCGAGATGTACAACATCAGTCACTGTTTCCTCACTGACAACACATCCACCTTCCCGTCTGCTGATGTGGTTGTCTTCCACCACCAGGAGCTGAGAAGAGGTCTGTCCCTGCTGCCCCTGCACCTAGATCGCCCGGCCTCCCAGCATTGGGTGTGGCTGTCAATGGAGCCTCCTGTCAACAATGCAAACCTCACACAGCTCACCGGCCTCTTTAACTGGACGATGAGCTACAGACGTGATGCAGACATATTCATCCCATATGGAAAAACCATGGTAGGAGGTGATGAGCTAGGCTTCCAGGCTGCTTCAAATCACTCCTGCCTTGTCAGCTGGGTGGTCAGCAGATACAAACCTCACCAGGCTAGGGCTTGTGTTTACCAAGATCTAAAGAAGTATATCCCCATAGAGGTATACGGAAAGTGGAACAAGAAACCCCTATCAAAAAAGAAGCTGTTGCCCACAATTGCAAAGTGTGTTTTCTACCTGTCTTTTGAGAACTCTGAGGCAAAGGATTACATCAGTGAGAAGCTCTGGAGGAACGCTTTCCAAGCAGGGGTCATACCAGTAGTTCTCGGCCCCAGCAGGGTGACCTATGAAGCCCTGGCTCCCCCTGGTTCCTTTATCCATGTAGCTGATTTCAAGACCACAGCAGATCTGGCTGCCTATCTGAAGCACGttgctgcagacagacaggcctaTGAGGAGTACTTCCAGTGGCACCACACTCACAGAATAAAAACCTACACTGACTGGAGAGAAAGGCTGTGTCAAATCTGTGTTAAATACCCCAGTTTACCAGCCAATAAAGTCTATCAGGACATGGAGAGCTGGGTTAACAGCTAATAGCGTATCTCTTTATGCTTTCAGGttattgtgatgtttttttgatTGGGACTGCTGATGCTACTGGGTTACCACATGCAAATGTTCAAATACTATACAGTGACAATTTGATGTGGGATTAGACATGTCTCAGTCAGCCGTGCAGTTTTGGAACTGCACACCACAGAAACAAATCTCAAGTGGTTGGTTGTGTTGGCTGTGCACTTCACAATAAAGGGGAAGTGGTAACCTC

Function

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG:

id description
K07635 FUT7; galactoside alpha-1,3-fucosyltransferase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81498 lncRNA upstream 29321 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA upstream 45225 11528049 ~ 11528755 (+) True LOC120561253
TU81448 lncRNA upstream 339400 11234347 ~ 11234580 (+) True G60730
TU81440 lncRNA upstream 350018 11210665 ~ 11223962 (+) True G60722
TU81441 lncRNA upstream 359880 11211588 ~ 11214100 (+) True G60723
TU81557 lncRNA downstream 26826 11603180 ~ 11603611 (+) True G60821
TU81558 lncRNA downstream 27424 11603778 ~ 11604436 (+) True G60822
TU81608 lncRNA downstream 219627 11795981 ~ 11796327 (+) True G60864
TU81626 lncRNA downstream 292271 11868625 ~ 11873116 (+) True G60876
XR_005639416.1 lncRNA downstream 297138 11873492 ~ 11876959 (+) True LOC120560076
XM_039804291.1 mRNA upstream 296496 11275018 ~ 11277484 (+) True ankrd34bb
XM_039804304.1 mRNA upstream 342093 11218951 ~ 11231887 (+) True gtf2h2
XM_039804305.1 mRNA upstream 342093 11218993 ~ 11231887 (+) False gtf2h2
XM_039804537.1 mRNA upstream 367868 11193487 ~ 11206112 (+) True oclnb
XM_039804538.1 mRNA upstream 367868 11193542 ~ 11206112 (+) False oclnb
XM_039803776.1 mRNA downstream 152108 11728462 ~ 11790629 (+) True stxbp1b
XM_039803777.1 mRNA downstream 154240 11730594 ~ 11788757 (+) False stxbp1b
XM_039804627.1 mRNA downstream 261404 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA downstream 261830 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA downstream 265326 11841680 ~ 11848140 (+) True LOC120561470
XR_005639564.1 other upstream 821540 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 821540 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 821540 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 827032 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1592991 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 349829 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1344793 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1344793 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2531129 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2565088 14141442 ~ 14142050 (+) True G61338

Expression Profile