RNA id: XM_039804291.1


Basic Information

Item Value
RNA id XM_039804291.1
length 2356
RNA type mRNA
GC content 0.45
exon number 2
gene id ankrd34bb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11275018 ~ 11277484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacaaaaacaaacaaaacacatttgtgCTTTCATAGAGCATTGCCctttctttacacatttaaagCAAGTTATTTTATGTGAGGATCTCAGAGTAACTATGTGCAGTGGAGACTGGGCATGGGTTTAGAAGAGTTtgtaattaaatgaaaaatgaaaatgatgagAATTTAGTGTTCCTCTTCCTCTATTGCAGGGACTGGGCTGTGTGTACCTTTGGACAAATGTGACAATCCTTTATCAAAGACACTGAAGGTGGATTAGAGGCAGCCAAGATCCTTACAATGGATGAGTCAAGAGAGGTTCGAACTGATGGCAATTCTCTGCTGAAGGCTGTCTATTTAAGTCGTCTGCGTCTGACTCGGCTGCTCCTGGAGGGAGGGGCCTACATAAATGAGAGTAACGAATATGGCGAGACACCACTTATGGTGGCCTGCAAGACACACCATTCAGATCCACAGAGTGTGCCCAAACACAAGATGGTTTGGTATCTTCTGGAAAATGGTGCTGATCCAAACATCCAAGATAAGACAGGCAAAACAGCTTTGATGCATGCATGCCTCGAACAAACTGGAGCTGAAATTCTGTCACTCCTGCTGAGCAGTGGAGCTGATCCAACTCTGGAGGATCATGCAGGCTTATCAGCATTGGTTTATGCAGTCAATTCAGGCAACAGGGACATCCTCAGGCTCCTCCTGGATGCCTGTAAAGCCAAAGGTAAGGATgtaatcatcatcaccaccaacAAACTGCCATCCGGCCATCAGATGACAAAGCAATACCTCAATGTTCCTCCACCTCCAGACCTTGAGGAGCATCTGCATTACACCCCAACATCTTGTTCCTTGTCTCCATATGAGGTCCAGCTACAACCTCCTTCACAGGGCTTCACAGCAACGGCTTCTTCCCAACCTGGTAGCCCCCGTCTTGGCCTCAGGGATCCCCAGCGTTTGGGCTCAGGGCCTGGCCTAGTCCCATCTCGACCAGGTTCTCCAATCCAACATCCTAGTCCTTTATGTGTTCCTGGTGTAGATAAACAACTTAATCTTCAGAGGCTTTACTCAGAGCAGTGGTCCAAAAGTCCTTGCCTGCTGCTCCAGCAGAGCCAGGCCTCCTCTCTGACAGAGGAGCCGGTAGAAATTACACCTGAGGAGCTGTCCGTCAATGGCCTCACCTTCCACAGAAGACTTCCAGCTGTGTCACGGTACAACAGCATTGATATCAAAGATGCAACAGTGCTTCTGAAAGCACGAGAGAACATGTCAGTAAATGAAAATAGGGGAGGAGGTGGAAGACGAGGCTTTGGTAGAAAGATGTCATATGACAGTTCACAACATTCTGCTTCACACCCAAACTTGCATCAAGACAGTCTCCCCTTTCCCCATGAATCCAGTCCTGTGGATAAAGATTCCTCTGACTGTCTCAGACAATTTAATGTTTCCAGTCTGCAAAATGTGGTCCATCGGCAGAACATTGGTATTGACCACTACAGTTCTGACTCTCAGTTACCACAGTTTGGCAGCCAAGACAATAGCTCCAAGAATAGTGGTGGAGCTAAAGTGGGAGCAGAAAAGCACAAGCTGATCAACAGCAAATCCTCTGCTCTGTCAGGATCCAGGGAGTCCTTGGATAGCACTGTCCAGAGACGAAGCATTGCCGGGCTGGAGCGAAGAGGCTCAGGGGCCCTTCTTTTGGATCACATCGCCCACACTCGCCCTGGATACCTCCCTCCTCTGAATCCCCATGCTCCTATACCAAATATTGGGGTCAGTTCTAGCTCTTCCTACCCTTTTAGTGGAAGTAGCAAGACATTGAATGGTGTTATTACAGGGTCAAAGCCTGTTCTACCTTGTGCACCTGTTTTCCCAAGGGATCTAAAAGCCAAGAAAATGCTGTGGAGACGACACTCAATGCAGAGTGAGCAGATAATACAGCTGGTCAACTTTGAGTAAACTTTTGGCCACTAGAATAAAAAAGTATCAGGAGAAAGTAAATGTGCTCTTACCAGTATCATACATTACTGTACTATTCCTATGATATCATCGCTAATGCCAGTTCATATGCCCTTTCAAGGCTACATACAGTTTAGGCATTCTGAGCCTGCAACGTTTTAAGACCTTTCATTACAAAATTTCATATTGTTGTATCAGCCCCAGCGACAGTTTGAGCACCATGTAATGACACACATAAAAAGgaaaattacaataataataataataataaaaaagaaaattacaacAAGGTAACTCCATACTTAAGATTGTTCTCACAACTGGaccatctccatgacaactgagcacCTCAATCGGTTAAAGAAGGCCATGAAATGCGGTTGACAGATTTGAAAAGGGcaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81448 lncRNA upstream 40438 11234347 ~ 11234580 (+) True G60730
TU81440 lncRNA upstream 51056 11210665 ~ 11223962 (+) True G60722
TU81441 lncRNA upstream 60918 11211588 ~ 11214100 (+) True G60723
TU81410 lncRNA upstream 116784 11157934 ~ 11158234 (+) True G60698
TU81388 lncRNA upstream 154974 11119777 ~ 11120044 (+) True G60682
TU81498 lncRNA downstream 210882 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA downstream 250565 11528049 ~ 11528755 (+) True LOC120561253
TU81557 lncRNA downstream 325696 11603180 ~ 11603611 (+) True G60821
TU81558 lncRNA downstream 326294 11603778 ~ 11604436 (+) True G60822
TU81608 lncRNA downstream 518497 11795981 ~ 11796327 (+) True G60864
XM_039804304.1 mRNA upstream 43131 11218951 ~ 11231887 (+) True gtf2h2
XM_039804305.1 mRNA upstream 43131 11218993 ~ 11231887 (+) False gtf2h2
XM_039804537.1 mRNA upstream 68906 11193487 ~ 11206112 (+) True oclnb
XM_039804538.1 mRNA upstream 68906 11193542 ~ 11206112 (+) False oclnb
XM_039802043.1 mRNA upstream 86807 11173019 ~ 11188211 (+) False marveld2b
XM_039804287.1 mRNA downstream 296496 11573980 ~ 11576354 (+) True LOC120561249
XM_039803776.1 mRNA downstream 450978 11728462 ~ 11790629 (+) True stxbp1b
XM_039803777.1 mRNA downstream 453110 11730594 ~ 11788757 (+) False stxbp1b
XM_039804627.1 mRNA downstream 560274 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA downstream 560700 11838184 ~ 11848140 (+) False LOC120561470
XR_005639564.1 other upstream 522578 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 522578 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 522578 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 528070 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1294029 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 648699 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1643663 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1643663 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2829999 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2863958 14141442 ~ 14142050 (+) True G61338

Expression Profile