RNA id: XM_039804301.1


Basic Information

Item Value
RNA id XM_039804301.1
length 3196
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC120561264
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37920192 ~ 37934852 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacgtGGGAGACTGCAGGCCAGTCTATCCAGGCTGCTTAGGAGCTGTGGAATGAGATTTGTGCGACTTTAAAGTGGATCAGTGTTTTGTAATGAATGGCTTGTTTTGGTCGGAGCCAGCCTATTATTAGCTCCACGCTCCGGAGGCCTTGCTTGCCTTCACTGAGAGGAGAGGACGGCCCGGGCTGCAGCTCTGCATCGCACCGGCAGGCTTCACATCACCGCCTATCCGTATTTCTGGCAATGCAATCGGACTAATCGCGCTGATCCAGCGGGGGGCGGGGGCCGGTTTGCTGGAACATCTGCGGTCCTCCTCCGCCTCTTCCCCCCCCTCCAACACTTGTTCCCTTTGCCTCGAAGATGAAGTTAAACGCGAGCCGCCGTCAGGTGCAAGCCGCTTCCGATGGAGCCCTGCTCTCTGTCTCGATCATCGACCAACCCGATGCAGCACTTCCCTATGTTGAGGTCCCAGCTGACAGATTCTGATATGGACTATGAGAGGCCAAACGTTGAAACTATCAAGTGTGTGGTGGTGGGAGACAATGCAGTCGGAAAGACCCGCCTTATCTGCGCCCGGGCCTGCAACGCCACGCTGACTCAGTACCAGTTACTCGCCACACATGTGCCCACAGTCTGGGCAATCGACCAGTACAGAGTATGCCAGGAGGTATTAGAGCGCTCCAGAGATGTGGTGGATGATGTCAGCGTGTCCCTTCGTCTCTGGGATACTTTTGGAGACCATCATAAGGACCGGCGTTTTGCATACGGCAGGTCTGATGTGGTGGTGCTGTGCTTCTCAATCGCCAACCCCAACTCTCTATACCATGTGAAGACCATGTGGTACCCTGAGATCAAGCACTTCTGCCCCCGCGCTCCTGTCATCCTGGTGGGCTGTCAGCTGGACCTGCGCTATGCAGACCTGGAGGCAGTGAACAGGGCACGGAGACCTCTAGCTAGACCGATTAAATCTAATGAGATTCTTCCTCCAGAGAGAGGCCGGGAGGTGGCCAAAGAGTTGGGGGTGCCATATTATGAAACCAGTGTTGTTGCTCAATTTGGAGTCAAGGACGTCTTTGACAATGCTATCCGAGCTGCGCTGATCTCACGCCGACACCTGCAGTTTTGGAAATCTCACCTCAGAAATGTCCAGCGGCCTCTCCTTCAGGCGCCCTTCCTGCCACCGAAACCTCCCCCACCAATAATCACTGTGCCTCCTCCGCCAACCACCACGGAGGAGCATCCAGTCGGTCTCCTGGAGGACCCGCACTGTGCCGACGTCATCCTGGTGCTGCAGGAGCGACAGAAAATCTTTGCACACAAGATATACTTGGCGACATCCTCTTCAAAGTTCTACGACCTCTTTATCATGGACACGCGCAACGAGGAGACTGAAAGGCCGTCTCGGGGCCCTCTCTCCGGCAGGGAGCTGCTGATGCGTGCTGCTAGCTTCGATGTTTGCGAAAGCAGTGACGACGGGGACAGGGCCAACCTGAGGGCCTGCACTAGTGACGGGACTCTGAAAGACTCTGAGGGGGCCCGACGGGGCAGAGTGCTCTCTTCGTGGAGCCGAGCCTTCATCAGCATCCAGGAGGAGGTGGTAGATGACCCTGTCACGTACAGCCCCAGGCCCATCACTGTCGTGCACATGGACCAGTCCATGCAGCTCGGACCTTTCAGATCAGTGCTTCGCTACCTGTACACAGGTCAGCTGGACGAGAATGAGAAAGAGCtaatgcacattgcacacattgCTGAGCTGCTGGAGGTCTTTGATCTGCGCATGATGGTGGCAAATGTGCTTAACAATGAAGCCTTCATGAACCAAGAAATCACCAAAGCCTTCCATGTACGGCGCACAAACAGAGTCAAAGAATGCTTGGCCAAAGGCACGTTTTCTGATGTAGTATTCAAGCTTGATGACGGCACCATCATGGCCCACAAGCCTTTACTCATCTCGAGTTGTGATTGGATGGCAGCTATGTTTGGTGGGCCTTTTGTGGAGAGCTGCACCAAAGAGGTGTTGTTTCCAAACACAACTCGCAGCTGTATGAGAGCTGTGCTAGAATATCTCTACACGGGGCGGTTTTGTTCTCGGTCTGATCTGGATGCAATGGAGCTTATTGTCCTTGCCAATCGTCTGTGCCTCCCCCATCTGGTTGCGCTTACAGAGCTCTACACAGTAACAGTGTTGACGGAGGCAGCGATGATGGGGGCCGACATTGATGGAGACGTGCTGGTGTACTTGGATATGGCTCAGTTCCACGGCGCCCAACAGCTCACTGGCTGGTGTCTTCACCACATCTGCACCAACTACAACAGTGTCTGCCgcaagtttaccagagagatgAAGGCCAAATctacagAGAACCAAGATTACTTTGAGAAACATCGCTGGCCACCTGTGTGGTATCTGAAAGAGGATGACCACTACCAAAGAGCACGCAAAGAGCGCGACAAGGAGGACTACCTGTACCAGAGACGGCAATGTAAACGCAAGTGGCTCTTCTGGAACATTCCTTCCTCCCCTAACTCAAACTCTCCTTCTTCTGGTTCATCCGCTGTCATCTGACCCAGCGGTAAGGCCAGGTCCACACTGATGCACTTCAGTGTGGTGGTGGCGAGTTGTTAAAGATACAAAAGAAGGTTAACACTGCTGGCTAGGTACGCCCCAATTATTCAGGCACTCAGTCTCTCGTCCTGTTTGTTTGCCGCTGCAGTCAAACAGCACTCCTCCAGGTCTGCACGGTCAGCTCTATCTGGCAGTTAAAGTAATTGTTCCTTAGATTTTTAGCTTGGTGTACAAGAACCTCAGTGGTATGAACTTCACTGACATACACATATTGATGGTTGTATGTTCCACTGAGTTTTTAAGTTTCAAATTTATAGGACTCTGCTGGCACAGAACTTTCCACCTGTGATCGTAATTATCATCAATTAACCTGAAGTGATTACCAAGTGCTGCTTATCAGCTGCAACAACCAGCAACTCAACACACTCAACTACTCCGTCTCAGAGATATAACACTTTGCCCTTAAGTGTTTGTACAATCTATCTACCAaactgtgtgtacagtatgatCTTATAAACAGGATGCAACGATAGTATGCCCTGCCAGGAATCCATTATTGAAGTCGCGTTGAACTCTAACCTGCTGATTATGATCGTGTAAGCATAAAGGAAAATGTTGTCAAGTTCCAC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90332 lncRNA downstream 365425 37538187 ~ 37554767 (-) False G67577
TU90331 lncRNA downstream 372882 37538187 ~ 37547310 (-) False G67577
TU90327 lncRNA downstream 376999 37535859 ~ 37543193 (-) False G67577
TU90336 lncRNA downstream 378533 37535859 ~ 37541659 (-) False G67577
TU90292 lncRNA downstream 475654 37440974 ~ 37444538 (-) False G67550
TU90466 lncRNA upstream 5029 37939881 ~ 37940295 (-) True G67681
TU90472 lncRNA upstream 54380 37989232 ~ 37989542 (-) True G67687
TU90684 lncRNA upstream 180394 38115246 ~ 38116233 (-) True G67861
TU90708 lncRNA upstream 211144 38145996 ~ 38146799 (-) True G67882
TU90709 lncRNA upstream 240873 38175725 ~ 38175961 (-) True G67883
XM_039802067.1 mRNA downstream 8957 37826890 ~ 37911235 (-) False LOC120559987
XM_039802068.1 mRNA downstream 8957 37826947 ~ 37911235 (-) True LOC120559987
XM_039804476.1 mRNA downstream 102816 37812922 ~ 37817376 (-) True egr3
XM_039803578.1 mRNA downstream 112512 37762546 ~ 37807680 (-) True bin3
XM_039802389.1 mRNA downstream 212056 37700498 ~ 37708136 (-) True ubl4a
XM_039804292.1 mRNA upstream 182286 38117138 ~ 38159292 (-) True slc25a37
XM_039804371.1 mRNA upstream 245427 38180279 ~ 38200948 (-) True entpd4
XM_039803806.1 mRNA upstream 273591 38208443 ~ 38247605 (-) True abhd17b
XM_039802138.1 mRNA upstream 401236 38336088 ~ 38344796 (-) True LOC120560036
XM_039804466.1 mRNA upstream 449847 38384699 ~ 38452066 (-) True inpp5l
TU90333 other downstream 365425 37538187 ~ 37554767 (-) True G67577
TU90335 other downstream 372882 37535859 ~ 37547310 (-) False G67577
TU90329 other downstream 372882 37538187 ~ 37547310 (-) False G67577
TU90330 other downstream 375314 37535859 ~ 37544878 (-) False G67577
unassigned_transcript_270 other upstream 491849 38426701 ~ 38426773 (-) True trnaf-gaa_5
unassigned_transcript_272 other upstream 500566 38435418 ~ 38435490 (-) True trnaf-gaa_7
TU90908 other upstream 1479030 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other upstream 1479030 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other upstream 1479030 39413882 ~ 39425293 (-) False LOC120560826

Expression Profile