RNA id: XM_039804305.1


Basic Information

Item Value
RNA id XM_039804305.1
length 1959
RNA type mRNA
GC content 0.46
exon number 15
gene id gtf2h2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11218951 ~ 11231887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atcgagctgcttcgtagggcgggacttgcgtagaagttacgtgggatccTTATTGTAGCTACAACTGATTTTTAACTAACGGAACGCTTGCATAGTGAGAAAGTAAGTTGTATCACGCACAATATTAAGACATAATGGATGAAGAACCAGAGAGAGCCAAGCGCTGGGAAGGGGGCTATGAGAGGACATGGGAGGTGCTGAAGGAGGACGAATCTGGCTCACTAAAAGCCACAGTGGAAGAGATCCTGTTCCAGTCCAAAAGGaaaagGGTGATAGAGAGCCATGGACAAGTAAGGCTTGGAATGATGCGGCACCTCCATGTGGTGATTGACTGTTCAAGAAGTATGGAAGACCAGGACTTGAAACCAAACCGCCTCACCTCTACTCTAAAGctGTTGGAAACTTTTGTTGATGAGTATTTTGACCAAAACCCCATCAGTCAGCTAGGCATTATCACCACGAAGAATAAAAGGGCTGAGAAGCTTACTGATCTGGCAGGAAATCCAAAGAAGCACACTGCTGCTCTGAAGAAAGCAGTGGACACTGTGTGTTTAGGAGAGCCATCCATATACAACTCTCTCAACCTGGCCATACAGACCCTCAAGCACATGCCTGGACATACAAGCCGGGAGATCCTGATAATCCTCAGCAGCCTTACTACATGTGACCCAGCCAACATCTGTGAGCTGATTAAGACCCTAAAGTCTCTGAAAGTGCGCGTGTCTGTAATCGGCCTGTCAGCAGAGGTCAGGGTGTGTACAGTATTGACCAGGGAGACGGGCGGGTCGTACCACGTTATCCTGGATGAGAGCCACTTCAAAGAGCTGCTGATGCTGCATGTCAAACCTCCTCCAGCCAGCTCCTCATCTGAATGTTCTTTAATACGCATGGGTTTTCCTCAGCACACCACCGCCTCTCTGACTGACCAGGATGCCAAGCCTTCATTCAGCATGTCtCATCTGGACAGCAGCAGTGCACCAGGTCTGTCTCTGGGAGGATACTTCTGTCCGCAGTGCCACGCCAAGTACACAGAGCTTCCCGTAGAGTGTAAAGTCTGTGGTTTGACTCTGGTGTCGGCTCCCCATCTCGCCAGATCTTTCCACCACCTCTTCCCCCTCCAAGCCTTTATAGAGAGTCCTGTGGAGGAGTTTCAAGAAGACAGGTTCTGTCAAGCTTGTCAAGGGGAGCTGAAAGATAAAAGTatATTCACCTGTCCATCATGTCGCAGTGTGTTCTGTGTGGAGTGTGATCTCTTCATCCATGACTTGCTACACTGCTGCCCTTGCTGTATTCACAGTCAGAGCGCCCCCTGAAGCTGAGAAGCTAACCGAGACAGAGACTGAAATAAACTCAGTGGTCATGTGATCTTATTGACTCATCATATCCGTCCTATCAGTGTCGTGCACCTCTGATAGAATAGATATGATGCACACAGGCTATGGACCATCCAGATTGTCACATTTCAAAGTTGTTGAAGATTGCCACAAAATATTGGACCGTTTCAGTTGATACATATCATTTACAGGTGAAAGCAGCTTCTTGCTAAAGACCGTGCTGAGTTGGGCTAAAGTTTCTGTCTGCTCTGAGAACTGCATCTGAGCCACTGCACTACTGCTTTTAAATCACACACTGCTTTATATGAGCCAGAAATGGTTTGTGTGCATTGTTTATACACATTTTTGTACTACAGTTCTAGTTACTTTATACAAAGTCTATGGTTCTGTTTGTGACAGGACAGTTACAATTTTTTAACCAGTGAGACATTTGTTTCAAAGCAGGCCTTTTTCCAATAACCCAGATTTTCTACTTTCAAATCCGTACTCTTGGATTTCCTATGCTAAATTTAGGGTAAGAGGCAGCTGCCCCTAGGGCTGGTCACAGTAAAATAAATCAGTACTTGTATGTTGTCACATTAAGCCTAACATTGTTAATGTTGGATATACAGTTACTTCAACAGAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81441 lncRNA upstream 4893 11211588 ~ 11214100 (+) True G60723
TU81410 lncRNA upstream 60759 11157934 ~ 11158234 (+) True G60698
TU81388 lncRNA upstream 98949 11119777 ~ 11120044 (+) True G60682
TU81312 lncRNA upstream 313364 10902061 ~ 10905629 (+) True G60620
TU81299 lncRNA upstream 378676 10814563 ~ 10840317 (+) True G60608
TU81448 lncRNA downstream 2460 11234347 ~ 11234580 (+) True G60730
TU81498 lncRNA downstream 256479 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA downstream 296162 11528049 ~ 11528755 (+) True LOC120561253
TU81557 lncRNA downstream 371293 11603180 ~ 11603611 (+) True G60821
TU81558 lncRNA downstream 371891 11603778 ~ 11604436 (+) True G60822
XM_039804537.1 mRNA upstream 12881 11193487 ~ 11206112 (+) True oclnb
XM_039804538.1 mRNA upstream 12881 11193542 ~ 11206112 (+) False oclnb
XM_039802043.1 mRNA upstream 30782 11173019 ~ 11188211 (+) False marveld2b
XM_039804291.1 mRNA downstream 43131 11275018 ~ 11277484 (+) True ankrd34bb
XM_039804287.1 mRNA downstream 342093 11573980 ~ 11576354 (+) True LOC120561249
XM_039803776.1 mRNA downstream 496575 11728462 ~ 11790629 (+) True stxbp1b
XM_039803777.1 mRNA downstream 498707 11730594 ~ 11788757 (+) False stxbp1b
XM_039804627.1 mRNA downstream 605871 11837758 ~ 11848140 (+) False LOC120561470
XR_005639564.1 other upstream 466553 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 466553 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 466553 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 472045 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1238004 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 694296 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1689260 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1689260 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2875596 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2909555 14141442 ~ 14142050 (+) True G61338

Expression Profile