RNA id: XM_039804312.1


Basic Information

Item Value
RNA id XM_039804312.1
length 6594
RNA type mRNA
GC content 0.49
exon number 14
gene id cmya5
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17998686 ~ 18011030 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACGCCTGGTCTAATGTTGGAGATCTACACCTCTCAAGCAATCATCTTGAGAGTACATCAACAGTCTGCGAGAGGTTGTCCAGGACCAGTCCGTGAAGCCCAAATTCCAGTGCCTGATGGTGGATCCGTCATTCTCTATGGTAACTGTTCAGAGTGAGGACAGTGGTATTGTTTGGGAGACGGCCTCTAGCCGCTGCTCTACTCCCTGGGCCTCTGAGACCAGCTCCATCTCTGAAGCCTACAGCATGGAGGGCTCTGGAGCCGCAGGAAAGATCACCATCGTCTTTGATGAGGAGAAAATAGTCCGCAGGAGGACGAGGTCTGGAGGAAGGAGCAGCAGGCTGGGGGACAGGCTGAGCCGACCTGGTAGTTCAAGATCGGCTTCAGCCCTTGGAGTGGAGAGACCGGAGATGGCAGAGGTTTCCCTCCCCAATGTTAAACAGGAGAAAACCGAAACAGAGCCAGACTTGGAGGAAATCAAAAATAAAGATCAGCAGCTGTTTAGTTTGATTTCAGAGGGTTATGAGATTCTCAACATCAGAGTCCCCTCCAAACTTCCCACTGTGGATGAGGAAGAGAGCACAGAGTTGCAAGACAATTTGTCTTATTTGGATGAGACTCCAAAGATCAGGTCCCGAAACCACCATGACTGGACACTGCAACAGAACCATACCCTGCCAGAGGAGGGGGAAATGATGCATCACCAAGAgCCCTTAAAGCAAGACTCTGCGGACACAgagctcagacacacacacactcagaaggAGAGCACCGGCGACATAGACTACTTTGAGAAGTTTACCCTGGTTGATGTGGTGACTCCTGGAGAAGAAGCTCCAGAGCTTCAGGAGGAGGCAGAACAGCGTGCAGCGAAGCCCCAAGTGGAGGAGCAAAAGCCGGCtaaggagacagacacagacagcccGTCTGCATCAGAGGACTCCTTTGTCTTTGTTACAGATGTGGAGATAGTTGGGGAACGCTTGGATGAGGTCTTCTACGGAGAAGGAGCTCCTGCTGAGGCACTGCCGAGGAGAGAAGACAATGAGGCGGAGAGTGCAATGAGAAGGAGACGAGAGAGCCAGAGATCTGGGAAGGAGAATGGCTCAGCGTTGTTTGGGAGTGAAGAGACCACCCTCACGCCCATTTATATCTCCTCTGGACCCCCTAAGATCATTGACCTCATCCTGCTGGAAGAGCCCACTGCCATGTCCTTTATGTATTCAGACCTTTACGAAGATGCTGTAGGCGAGAGGACGAAGAGCGACGGGGAACACTCCGAGGCAGAGAGCGTGGCATCTGAGAAGACCTATAGGAGACGTTTGTCAGATTCAGAGGAGGCTGACGGGTACCTGGAGAAGTTTATTTTGAAGGATGAAACTCCCACAGTGGAGGATCAACCAGAATCAGTAGAGGataagagggaggggaggatgaTGTGGTCGCAGTCTGAGTTTGACACAACAGGATGTCTAACAAGAGTGGACAGAGAAGAAGACAAGgacaagacaaagacagaggaaacaACGACTCAGGAAGTCAGTGTTGGAGATAACAGCGACGATTTACAATCAGCAACATTTGAAGAGAAAAGAGTAATAAttacagagacagaaaaggagagggaggaaaTACAACTTTCCATGGGGACTGAAGAGCAGACTGTCAGAGAAGCCTCGGAAGAATCAGTTCTTGAGTCTAAACTGGAAGAGGATCAGGTGGAGGATCTGGAGGTGACACATGAGGTAAAGAGAGACCAGACCGAGCCTCCTGAGAGCAGCACTGATGAACCACTTCCGGAAACTCATCAGGTGGACAGTAAAGTAGAGAAAACAGAGCAGAGTGAGGAACATCAGAGAGAAGTGCCAGCAGAAACAACTAGCATGATTAAAACTGAGCAGCCATGTCAGAGACAAAAAGTGGTAGAAAAAACAGCTCAGGTGGCTGTAAATGCTGCAGAGGAGACAGCTGTGATAACACCTGTAAGTACCGAGGCGCCTCCCATCATCACTGAGAAGAGTTTCTCTAAGGAGGCAGCTGCTGACACTGAGATGGTGGCTTTTGATGAGAAAGTAGTTACTGAGGCCATAGCAAAGGCCCCGGCTGAAGCTAAAGATCTTGAGACTGAAAGACAGGAAATTGTTACCTCTACTGAACCAGCGGAAACAACTAGCATTATTGAAACTGAGCAACCATGTCAGACACAAAAAGTGGTAGAAAAAAATGCTCAGGTGGTTGTAAATGCTGCAGAGGAGACAGCTGTGAGAACGCCTGTAAGCAGCGACGCGCCTCCCATCATCATTGAGAAGACTTTCTCTAAGGAGACAGCTGCTGACACTGAGATGGTGGCTGCTGATGAGAAAGTAGTTACCGAGGCCATAGCAAAGGCCCCGGCTGAAGTGAAAGAACCTGAGACTGATAGACAGGAAATGCTCACCTCTACTGAAATAGAGTCATCTGCCGAAACATCACTAAAAGAAGCAGTGGAAGTTGTTCCTGAAGATGTTGCACCTGTTGAGGTCACCACTGACTGTGATTCTGCAGTACAGGCATTAGTGGAGGTCACTGAAAAAGCCGCGGATGAAAAAGAGATCCAAACTCAAGTTCAGATTGATCTTCGGGAAGTTACAAGTGTTGAAACAACGGATGTTCACACAGctgaaggagaggaggaacatGAGGCTCTGGCAGAGGAAAGTACAGTTGAGAGCCAGCCGTCTGAATTTATTACTGAAGCTGATCAGGAGTCAGAGGTTAAAGCTGGGATCTCAAATGAAGTAACTGAACCGGTGTTGCCAGAAGAagtgaagacagattcagataAGAAACAGCTTGAAATTCTTGAATCGAAGCAGCATCAAAAAGAGGAGTCAGTAACTGACAATGAGCTAATAACTGAAGCCAAAGATAAAACCCCCACAGAGGACACTGGTGCTCAGGGGATGGTGAATGTGGGTGATGAGTTCATCCTCCTTGTCTCCAAAGGACAAGCTGTAGAGATGGACATAGCGATCAGTCAGTCGTCAGAGAAGACTAGAGGTGATACAGTAGCTCTCTCTGAACCTGACAGCACATGTGAACATCTCATAGCACCTGAAACCACCACAATATGCCCAGACACTCTTCAGGCCCCAAATGTAGAAACAATGACAGAGCCTCAACTGGAAGTAAAACCTGacattgttttaaatgaagaCGCACTACCCAGAAACGAGTTAGACAGGAGGTACTCTCCTCCAGCTCCTGTGGAGGAGGCCAACACAGAGGAGCAGAGGATGGACTGGGACTTTGAAGAAGACGAGGGCAACCTTTCCCCTCTGAGGAGCTCTACTCCCCAGGAGGATTTGTCCGGGCTACAAAGAGAGAATACAAAGTCAGGAACAGCAGATGTAGAACAAAAGGCAGACATTCACAAGGTGGAAGATGCCCCAGAAACAAGCATTGTTACAGAGGATTCCAGTCCAGAGATTGATCTGCAAAGAGAAGATGTAGAAGAAAAGATAGAGCAAGATGAGGCAGTTGCAGAGGCTCCAGAGGTGATTGCTGAGGAGCTTGAATATGAGATAATATCTAAACAAGATGCAAAAGATATGCCAGAACCTGAAACACAAAGAGATGCAGAGGAACCAAAACCTGAGTTTGGTCAGCCGAGAGAAGAGAGGATGGAGGTGGAGACGGAGGAGAAAGTCTTGGATCTGCCCCCAGAAGAAGAGCTCATTGAGGCTGACTATGAAATCATCGATGCAGAGGAGCAGAGTCAGGCCCGACTGGCTGCTGAGCTGCAGGGGATGGACTGGTTCTGTATCACCTGTGGATGTCTGCTGTCCGAGGATGACTATGTGTCTGGAGAGCATCACGGCCACGAAGTTGCTGCTGTGGACCAAGCCTACGAGGAAATCAAGGAGAAGCTGAGTGACTGGATCTCAGAACTTCAGGGGAGGTCAGAGAACATCGAGGACCTGGTGTCTGAGCTTGAACTGGCTTACAACTCTGTAGAGGACCAGTGTGTGGAGAGCGAGGCAGCGATGCGGGTGCAGAATGAGGAGATGATGGCTCTGGTGATGGAGCAGTACAACGACATGTCTGTCAGCatggaagaggagaagaaggcCAAGCTGGAGCAGCTATATGACCAGATTGTCTCCTTCCAGGAGAGCATCGACTCCACCAAAGCCACTCTGGAGACCACGGCCAGAGAGGCTGACACTGACGCACGGTCACCTGAAGACATTCATGCAAGTCTCAAGGCAGCTCTGGACTCAGCCATGTCACTGGAGCTGGGTCCCAAGGGACTGCTGGTGTTCGAGGACTATGCCAAGGGCAACACTTCCAGCTCTCACCTCGCACAGCGTAAGGGAATCCCAGTTCCTCAGAGACCTACGCTGCAGCCTCAGGAGTCAGGCTCAGCCACCAGCACTAGTGTCACCGTTTACTGGAGGGTCAACCCTGGAGATATCATAGACTGCTTCCAGGTCTACTGCATGGAGGATCCACAAGGAGCTGTGTCAGAGGAGTACCGTGTGACAGTGAAGGAGAGTTATTGTGTCCTGGAGGAGCTGGAGCCTGACAGGACATACAAGGTGTGGGTGATGGCTGTCAACTATACAGGCTGCTCTCTGCCCAGCGAGAGACTCTCCTTCAGAACTGCTCCATCAGTGCCAGTGATTGACACCGAGTGCTGTACTGTCATGTGGGATTCAGCCACGCTGCGGTGGAGCTCAGCAAGTCAGACTCCCGAACACAGTTACACGCTGGAGTACTGTCGCCAGTATGAACTGGAGGGAGAGGGGCTCAGGTCCCTCACAGGCATCAAAAGCTGTGAACAGAGGGTTCTCCTGCAGCCCAATGAGAATTATCTGTTTTACATCAAAGCTGTGAACGAGTCTGGAGCCAGCGAACAGAGCGAGGCTGCCCTCATTTCCaccaaagGGACAAGGTTCCACCTGCTGAAAGCCTCAGCTCACCCCGCCTTGGAGCTGTCAGTGGACCAGACCACCCTGCACTACTCTCAGGATGCACATGAAAACACACTATCTACAGAAAATGAGTGTCCATCCATCCTGGGTGAGTTGTTGCCGGCACAAGGGCATTACTACTGGGAGACCCTTGTGTCAGGAAGCACAGCTTACAGGCTAGGAGTGGCATATAGCACAGCCAATAGAAGCAGCCCACTGGGAGAAAACAGCCTGTCATGGTGTTTGCAGTGTATTCCTACACCATCAGGCTGCAGGTATCAGCTGCTCCACAATGAAGTTCAGTCCAGTGTGTTTGTGATTGAGATGCCTGAGCGAGTGGGTACTCTCCTGGATTACCAGCTTGGTCGTTTATCTTTCTACAATGCTCAAAGTGGTCAGTTGTTAGGCACTTTCTGCCAGCGCTTCACCCAGCCGTGCCACCCTACCCTGGCCCTGGAGATGCCCGGCAGCGTGGAGGTCAGCATGGTGCTGGAGGTGCCGGAGTTTACCAAGGACAGCTAGCTCTGCTATCTGCCTCACACACTGAGGAGTTTACAGTTCATGTTGGACATATTATAATTTGAATGTTCTTACTGTATTATAATTGATGACCACCATTGCATTACTGAGAAAGGTGCATATATGGCAGGGCATCAAATATACGAATATCAGAAGACATACTGGGTCCTATTCTTTTAAAAAGGCCTCATTGATGGTTTTGTGTGTTCTAGTGAGATCCAACCATATTGaagtcaaacacacactgtatcATTACTGAGACAAACAATAGAGTCTGTCATCACGAAGTTTAGACACTGAGTTTATAGCTCCAAGAGACATACTGTGGCACTTTTGAACTGCATTTCatattgtgaatgtgtgtaaataACCTTTGTAAACAGATGTGATCTCTTCTATATTTAATGTGTGATTCGCAACAAGTGGAGATGGCCTGTTTACCTTTCTTTGTCTTGTAAACTGATTTTCATGCTGAGTTGAATgaacatgtttatttttctatttgcaAAAATGGActgcttgtttattttcagcTCATTAGCTTTTCTAACATACATTCcccactgggggggggggggctcagtaCTCCATTAGCTGTAATATTTGCTCAAAATCAGGCTCCAATTCATTTCTGCCACCAATCCTAACAACTTCTGCTAAATGTATCACGCATTTAGACGTCCAGATGGCTTTTGATGGCTTACAGCTACTGTTGATAGGAGCCATACACCTTGCTGACAAAGCTACATGGTTGTCCAGGGGACATGTCATTTCACAATTATTACTAAACTATTTTCCAGGCACTTGGACCTTTTCTTCTCATCGCTGACACCTTTCCTCATTTCTGggaaaacagagagaggagagggagaggaagaagaggggtGTGGGGCAAACACATGCAGACCATCACGGAACAGCTGGGATTTGAAGAACAGCTCTTTGAAAAGTGACTGGGACTGATAACACTGGGTTGGGAAGTTGGAACCATTTGTATTGTAGCTAAACTCAGGAAGGATCTATTTCTGTTACAGTGGAAAGTTAGGACCCAGTCTGCAGACTTGGCACTGTTTTTGCACCTTATCTCAACACCAGAGTTATTAAATACGTTTCATTcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83482 lncRNA upstream 58920 17939027 ~ 17940846 (+) True G62344
TU83414 lncRNA upstream 185953 17813589 ~ 17813813 (+) True G62294
TU83396 lncRNA upstream 241709 17757855 ~ 17758057 (+) True G62280
TU83311 lncRNA upstream 427065 17568081 ~ 17572701 (+) False tmem167a
XR_005639496.1 lncRNA upstream 454858 17536842 ~ 17544908 (+) True LOC120560616
TU83519 lncRNA downstream 4375 18015405 ~ 18017448 (+) False thbs4a
TU83529 lncRNA downstream 43769 18054799 ~ 18056149 (+) True G62372
TU83579 lncRNA downstream 116506 18127536 ~ 18127745 (+) True G62406
TU83580 lncRNA downstream 117796 18128826 ~ 18129069 (+) False setbp1
TU83666 lncRNA downstream 282230 18293260 ~ 18296903 (+) False G62484
XM_039804126.1 mRNA upstream 1385 17991866 ~ 17998381 (+) True tent2
XM_039804124.1 mRNA upstream 1807 17991866 ~ 17997959 (+) False tent2
XM_039804125.1 mRNA upstream 1807 17991962 ~ 17997959 (+) False tent2
XM_039803325.1 mRNA upstream 32279 17952081 ~ 17967487 (+) True LOC120560642
XM_039803592.1 mRNA upstream 49709 17945795 ~ 17950057 (+) True LOC120560760
XM_039803164.1 mRNA downstream 6337 18017367 ~ 18029386 (+) True thbs4a
XM_039802748.1 mRNA downstream 63738 18074768 ~ 18128897 (+) False setbp1
XM_039802746.1 mRNA downstream 63738 18074768 ~ 18114842 (+) True setbp1
XM_039802747.1 mRNA downstream 67055 18078085 ~ 18110513 (+) False setbp1
XM_039802172.1 mRNA downstream 122617 18133647 ~ 18139334 (+) True slc14a2
TU83072 other upstream 1465617 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1523861 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1523869 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2222625 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 2380622 15619073 ~ 15619144 (+) True trnac-gca_21
TU83701 other downstream 319675 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 396357 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 405098 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 650127 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1423877 19434907 ~ 19448950 (+) False rasl10a

Expression Profile