RNA id: XM_039804321.1


Basic Information

Item Value
RNA id XM_039804321.1
length 2078
RNA type mRNA
GC content 0.46
exon number 11
gene id vdac3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26543026 ~ 26553731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCGGCCGGAGGTCTGACTCGCGCATGCCcagtgtgtttgtctctgcttTCTCCTTCACTGTGCCTCGCTGCAGCGAACAGCGTCGTTAAACTCTGCAAGCTCCGCCCCATAAACAAAGACATGGCAGAGAAAGGAGTGGGGTGTGAGGTGCAGCAGGACAAGACAGGAAAAGGCGAAAAGGCAGACAACAAAGGCCACTGTGTGACATGTCAGCACCACGCACCTAAGGGACATGGCACAATGGCCGTCCCTCCTTCATACTCAGACTTGGGGAAATCTGCCAAAGACATCTTCAACAAGGGCTTTGgatATGGAATTCTAAAGCTGGATGTTAAGACCAAGTCCCAGAGTGGTGTTATgGAGTTTGCCACCTCCGGCTCCAACAACACTGACACAGGAAAGTCAGGAGGCCACCTGGAGACCAAGTACAAATTGAATGAGCTGGGCCTCAACTTCAACCAGAAATGGAACACAGACAACACTCTCACCACAGAAATCACCATGGAGGACCAGCTGGCTAAAGGCCTGAAGCTCGGTTTGGATGCGTCATTTGTGCCCAACACTGGCAAGAAGAGCGCCAAACTGAAGTCCGGCTACAAATGTGAGTTTGTAAATGTTGGCTGTGACCTGGACTTCGACATGTCCGGTCCCACTCTCCACGGAGCTGCTGTGCTGGGCTACGAGGGCTGGCTGGCGGGTTACCAGTTGGCTTTTGACACAGCCAAATCTAAACTGACCCAGAACAACTTCGCCCTTGGATACAAGGCCGGTGACTTCCAGCTTCACACCAACGTAAATGACGGCACAGAGTTCGGTGGCTCCATTTACCAAAAGGTGAACAGCAACTTAGAGACGGCAGTCCACCTGGCCTGGACAGCTGGCAGCAACAACACAAGCTTTGGAATTGGAGCCAAATACCAGCTGGATAAGGATGCCTCCCTGTCTACCAAAGTTAACAATGCCTGCCTCGTTGGAGTTGGATACACGCAAACCCTCAGGCCAGGAGTGAAGCTCACCCTCTCTGGGTTGATTGACGGGAAGAACATGAACGGCGGCGGACACAAAGTCGGCTTGGGTTTCGAGCTGGAAGCGTAAAGATTCAGCAAGAGGACAGAcaagaagagagaagagcaaCACAAGAGAAGAATAAAGAGCCCAAATGTGAGAACACGGTTAAGGTCGACCCAGCGACACAAACACATCTTCCCTCTGAGTcctacacacatatgcacacgcatacacacattcGTTGGCCTTATCCCTGAAACCCAGAGCAGCCTCCAAGACCTCTggcactgtagttttaaaaGAGTCAAGAAATTTCTTGTGTTGGTTACTTTTaaattttacattatttacaacTCCCACAACCAACCTTTGAGCAGATATTATCAGAATACAACAGACTTGTCAACAGGTAATTCATGCAAAAGCCCTGTTCTCCAAAACATTTGCTGCTTACGACCAGTTTGACCAGACAAAGTGCACTTCCAACAGAGCATTTGTGTCTTAAACAATCGGTTTTCTTcctgaaaaaaagatttgaagcaCCTTCTTATTTTGACTGTCTGgtcagcttgtttttttttgttcagatATACTCTGGGTTTAAGACATTATAAGATTAATAGAGGATGCttgttttggtatttttttgtttttcaaggcTAGAAGGAgtttttttgacttttcattGTCCCATTGACAAGTACAGTGACTGTAAACAGATGCAATAAAAGCTGGAGAGAATTAAGCAGAAAAAAGACAGAGTGGCTGATCCTTCTCAGAGTGAGTGGACTTTAATTTCAGCATTAGACCTCAGTAACACAGTTATACTGTGAACCCTCAGTTGCCTAAATGTCTATTTTTCAGGTCCTGTTTGTTAAAAGGGCTGACGGTAATTTGAGACTCTGTGTCACCTCTTTGTCTTGTCTCATTTTGTGTCCTGTACATGTTCAACCTTTACCACTACATTTCACTTTATCTGTGCTGTGCTTTGTATAGGAGATCTAGTCAACAGTTAGGACCTCAAACTGATTTTATTGAATTAATGGAATAAAGAATGTTAAACACTA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86818 lncRNA upstream 2390 26540415 ~ 26540636 (+) True G64841
TU86816 lncRNA upstream 2803 26538658 ~ 26540223 (+) True G64840
TU86815 lncRNA upstream 4485 26538268 ~ 26538541 (+) True G64839
TU86813 lncRNA upstream 5331 26535108 ~ 26537695 (+) True G64838
TU86814 lncRNA upstream 7719 26535012 ~ 26535307 (+) False G64838
TU86879 lncRNA downstream 18513 26572244 ~ 26580813 (+) True G64893
TU86926 lncRNA downstream 109036 26662767 ~ 26663526 (+) True G64930
TU86940 lncRNA downstream 128787 26682518 ~ 26684255 (+) True G64944
TU86951 lncRNA downstream 207660 26761391 ~ 26829185 (+) True G64949
TU86978 lncRNA downstream 339970 26893701 ~ 26896143 (+) True G64967
XM_039804313.1 mRNA upstream 31781 26506645 ~ 26511245 (+) True rpl6
XM_039804369.1 mRNA upstream 38022 26499573 ~ 26505004 (+) True acaa2
XM_039804411.1 mRNA upstream 46718 26494284 ~ 26496308 (+) False c6h22orf39
XM_039804409.1 mRNA upstream 49462 26489321 ~ 26493564 (+) True ufd1l
XM_039804408.1 mRNA upstream 54625 26476188 ~ 26488401 (+) True dhx37
XM_039804082.1 mRNA downstream 32049 26585780 ~ 26597313 (+) False plat
XM_039804086.1 mRNA downstream 32049 26585780 ~ 26597313 (+) False plat
XM_039804087.1 mRNA downstream 32049 26585780 ~ 26597313 (+) False plat
XM_039804083.1 mRNA downstream 32056 26585787 ~ 26597313 (+) True plat
XM_039804085.1 mRNA downstream 32056 26585787 ~ 26597313 (+) False plat
TU86790 other upstream 46640 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other upstream 46698 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other upstream 46765 26494335 ~ 26496261 (+) False c6h22orf39
TU86770 other upstream 128429 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 627497 25914382 ~ 25915529 (+) False LOC120560031
XR_005639500.1 other downstream 60506 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 91289 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 651503 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2796393 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3633117 30186848 ~ 30212108 (+) False fbxo21

Expression Profile