RNA id: XM_039804331.1


Basic Information

Item Value
RNA id XM_039804331.1
length 1641
RNA type mRNA
GC content 0.53
exon number 14
gene id ak8
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14582084 ~ 14599142 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGTTATATCTATGGTTCCGCCCTGCACGCGCGCTGATGACGTTTTTCCCTAACAACAAGCAAACGCTTCTTAGCAACCGTCTCAATAAACACCAGGAAATAAAAGCATCCGTGTCTGCCAtcctcatccatccatccatcctcctcctcctcatcctgatGGATGAGACTGTGAAACCCCTGAGGGTTCCTCCTCAGATGTCCGTCTACGCTGACAAACACAACATCTTCCACCTGGTGCAGAGCATGCTGTCCAGTCTGGTAATTGATCAGCCTGAAGATCCGATCAGTTACCTGATCAGTCTGCTGAGGAGAAGCAGCGTGGACATTCCCAGGGTCCTGCTGCTCGGCCCTCCTGCTGTTGGGAAGCACACAGTGGCCAAAAAGCTGAGTGCTGAGCTGAGAGCTGTCCATGTGTCCATGCACAGTTTACTAGAGGGCCAATCAGAGCTGAGTGTACAGGCACGCCAATACATACTCAAagagcaggagcTTCCTGCTGAGCTGCTGGTCAGACTGGTCCAACAGAGACTGAATGAGATCGACTGCTTCAACAGGggCTGGGTGTTGGAGGGAATCCCTCAGACTCGTCTGCAGGCTCTAAGTCTCCAGCAGGCTGGAGTCATCCCTGAACATGTTGACGTTTACCATCGGACCTTCATCTGGCCGGTCGACGACACCGTCGCTCAGCGTCTGGAGGACGGCCGGAGCCCGTCAGAGACGCAGCGATTGGCTGAGCTGCAGCGTTACCGCTGTGAGGCCACAGGTCTGAGCTCAGCCTATCAGCACGTCCTGAAGATCATCAACGCTGACCAACCACACGCTGACATCTACCAACaagtgctgGCTTTTGTCCAGACTCGTCGTCGCTCAATAACTCCCAGAATCCTCCTGTTGGGTCCACCGGGGTCGGGGAAAAGTCATCAGGCCAGACTGCTGtcagagaaatacaagatgGTGGATgtgtgttgtGGTCAGCTGTTGAGGTCTGTAGCAGCTGATGGTTCAGCTCTGGGAGAAGAGATCCAATCCTACCTGGATGATGGGAGGCAAGTTCCAGACTCCCTGGTGCTGCAGGTTCTGGAGGAACGTCTGAGCCGACTGGACTGCAGCTGCAGAGGCTGGATCCTTCACGGCTTCCCCTGCGACCTGCAGCAAGCCAAGAGCCAGCAGGAGTCCCAGCAGCCCAACAGAGTTTTCTTCCTGGAGTTGACAGATGATGTTTGTCTGGAGAGAATCACTCTCAGAGCTACAGATCCAGTCAGTGGAGAGAGGTTCCACGCTATGACTCGACCGGCTCCGACCTCTGAGGTCCAGAacagactgaagaccagacctGAGGACAGCACAGACATTGTAACACACAAACTGAGTCAGTACAGGATACACACTGCTGCCCTGCAgtCTGTGTATCCAGATGCATATCATATTGATGCTGATCAGGATCCTCACTCTGTGTTTGAGGCTCTGGAGAGCAGACTGACAGCTTACTGACAGTGGAGACACCAGGAGACACCTAGAGACAGTTTTGGGAGACAGGAAGTGGAGTGACTGCTATCACTCTTCTCTAAACCTTTCCTTCATCATTTTGTAAATGGTCTtggtttgttttaataaaaataacaagttccttccttTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639534.1 lncRNA downstream 22355 14559086 ~ 14559729 (-) True LOC120560921
XR_005639535.1 lncRNA downstream 25585 14554203 ~ 14556499 (-) True LOC120560922
TU82515 lncRNA downstream 96547 14485242 ~ 14485537 (-) True G61586
XR_005639560.1 lncRNA downstream 115730 14460926 ~ 14466354 (-) True LOC120561033
TU82547 lncRNA upstream 30469 14629611 ~ 14630973 (-) True G61601
TU82599 lncRNA upstream 199778 14798920 ~ 14799149 (-) True G61647
TU82581 lncRNA upstream 203422 14802564 ~ 14867657 (-) True G61631
TU82649 lncRNA upstream 366165 14965307 ~ 14965785 (-) True G61695
XR_005639490.1 lncRNA upstream 384325 14983467 ~ 14985185 (-) True LOC120560531
XM_039803814.1 mRNA downstream 1921 14566031 ~ 14580163 (-) False ddx31
XM_039803811.1 mRNA downstream 1921 14566031 ~ 14580163 (-) False ddx31
XM_039803812.1 mRNA downstream 2267 14566031 ~ 14579817 (-) True ddx31
XM_039804218.1 mRNA downstream 34221 14535268 ~ 14547863 (-) True qsox2
XM_039802064.1 mRNA downstream 49325 14515799 ~ 14532759 (-) True LOC120559985
XM_039803266.1 mRNA upstream 1119 14600261 ~ 14625197 (-) False tsc1a
XM_039803264.1 mRNA upstream 1119 14600261 ~ 14625197 (-) True tsc1a
XM_039803265.1 mRNA upstream 1119 14600261 ~ 14624536 (-) False tsc1a
XM_039803153.1 mRNA upstream 390005 14989147 ~ 14991145 (-) True LOC120560533
XM_039804652.1 mRNA upstream 430734 15029876 ~ 15041380 (-) True tti2
TU82089 other downstream 992752 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3392343 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 6179518 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6694681 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6997565 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 339833 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 345354 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 349617 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 352360 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 368537 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile