RNA id: XM_039804336.1


Basic Information

Item Value
RNA id XM_039804336.1
length 3729
RNA type mRNA
GC content 0.51
exon number 2
gene id unm_hu7912
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 367381 ~ 376915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGAGGCACGCGCACAAGCGCAGGCTCAGACACACCTCCTCCTTCccctccatcacacacacacacaaacacacaagagagCATCGCCGGGTGAAGTAGACAACATGTAAAGGCAGCGGGAAGGACAAGCGCTCGGCTCCGGCAGGCTCGCGGCAGGTGCGGTAGGCTACGGCCGAAGCTGCACGGTCTCGCGGAGGACGGGCTGCCTTTTCACCATGCCCCCCGCATCCCGACTACTCTCTGGCGAGACGGCTGTGGTGATCTTGAATCACACTGAATGGAGAGCATCGAAAGTTCATTAAGATGACACGAACACACCCCCCTGATATACTGGCATCAACTCTATTTCGGGACTTCACTCTAAATCCCATCCCTGACCCCTCCATTTCTCTCCACTCCTCCCGGCAATGTGACTTGAAAATGATTGACAAACCGGAAATCATCAACAAAAGACACTGCCGTAGCTTTGACTTCATTGAGTCCCTGGACGACCCGCAGTCCCTCGCTTCCTCAATGGAGTACCCTTACAAGAGGGCCGAGCATCAGACATTAAACAAAGATCCAATGTGGAATGGACTAGATCAACCGGGGCACCTTCGCTTTTCTTCTCCCGATCTGTTCAACACCAGGCTCTTCCAGCAGCACACCACCCAGGACAAAACCAGCCACCTTACGTGGTCAGACTCTAAAAAGAGAACACGATCTAGAAGCGCTCCGAGAATTAAGTCCACCCTCACTCCTGTGCCCATCTCCGTGTCTCCCCCAGGAgcccggaaggggagggacgcGCCTCAGGTCGCGTCAGATACCTTGAGGACTTCCGAAACAAACCGAGAACCCTACTCCTCCTCAAACAGGGCTTTTTTAAATGAGGTGCATCCCATCAAACTGCAGCCTCAGTCTCCCCTCTACGTTTCAGACTGTTTCGAGGAGGATAAACCGGATAAACCAGCCCTAACCCCTCATGTCAGGTGCCGTGTGGACATTAAACCAGATGCTGCTGTACTGCAGCACACATCTCGGCAGATTCCCAATGTACGGCCTGAGCATCTTTGGCAGAGATACTCCCAGGCCAGTAGCAGTAGGGGTTTGTATGTACCTCGGCAGATTGCCTCCTCACCAACGCCCACTCCGAGCGAATGCTACAGTGGAGATTTTAGACAAGGATATCACTATACCACCAGCATGTCTCCCATCTCATACCAGCATCTTGACATGCACAGAATGCCGTCACCGACAGCACCATATCTGAGTCAGGAACAAAGAGCTTACTCAAATCCTAACATACCAACCAAGTTTTTCTATACAGAGGACCCTGTTCGGTATCCAGTCCATCCCTACTCTAGAGCATACTTTCAGGACGACCGGTCCAGTCTGACCAGCCATGGTAGTACAATGACTAGTCAGTATGATCCAAGGACTCGATGGGTGCACACACTTCCTGTCAGGCCGTATTACACCGAAAATCTTTCCAACAGAGAGCCAGCACACTCTGTATATAGTAGGCCTTACTCCACCAGTGAGGCAGGATCATACTTTTCTCAAAGCCCACTGTCTAGATCTTTCTATGGAGAGGACAGCCGGTTCAATCCATACCATATGAGTAACCCaaagttgttttattccaaaccaTGCTCTCCTGAGGAGCAGTACTTTCCACCAAGGCCATACCATACGGAGGGTCGCCGACGCCCTCGAATGTCGCAGGCCTTATCAGATGACTGGTATCGCTCGAGTATATCTGGTTACTCTAACCAGTCCTCCCAGCACACACCACTGAGAGTAAGGCAAGACCCCAGTATACCCCCGTGGTTTACTAACAGCTGTGTGGAGACAAGTAGACTAGGTGCAGAGGTCAGAAACCACTCCAAGTCTTGGGACAATATTCTATATCCGCGGCAGGACAGAGAGCAATCTGTGCCTCGTGGCCGGAGCTATGAGAACCTGTTTCACCAAGCAAAGCAAGCAGCATCGTCTGAAGTTACATCTCAACCTGTTATCCTTAACCTGTCGAGTTCACCGAGGCGCTACGCCGCCCTTTCGCTCTCTGAAAGCTCATTAGAGAGGGGCTCAAGCAATCCGTGGAGGAATACCAAGAGCGGGCACTGGTTTGTAACTCCTGAGATCACCATAACAGATAACGACATATGTGCAGGCAACAGAAAGCGGCGCGACGTGCACTCTGTCAGCTGGGATACGTTGGACGAGGAAAAGACACCGTCTCCCAGAGTAATGCATCACAAGCAGCCACAAAATACACCGGACATTACCAAAGAGAGGAAACACAACAACTTCTCCCTCCAGCAGAGTCTCGAGCAACTGGATGAGCTCTTAGCTGATTTGGTTATTGATTACAAACCACCCACTAGCAGAAAGTCAAGCGTAGACATTTTAGACCAGCTGAAACAACTCATTACCGAAGATGACGACAAAGACCGAGGATCTTCTGGGCTTGAAAACGTAGGATGTCTGAACTCACAGCTCCCGTCCTCTAAATCCAGCCCAGACACAATCAAAGACCCTGACAGTGGGTTCGACGCTTTACAAAGGAGTGCAGAAGAATGTTCTCCAGACCACAGCACCGACGACGACGACACTATGGTGTGCTCCAACAAGAAGTGCAACCGGATCGAGAGCATGTTCAACGCCTGCTTGTACTTCAAATCATGCCACAGTTGCTACACGTTCTACTGCTCGCGAAACTGTCGCAGGGATGACTGGGAGATCCACAAAGACACCTGTCTGTACGGCCGCGTGAACAGCGTGTGTCGACACGCTCTAAAGTTCTGCAGAGAGAATTCAGAGATCCACAAAGCCTTCTCTCGCGTCGCTAAAGCTGGCTTCCTCTCCAGAGGGAGAGGCGTTCTCTTTCTGGGTTTTGCTAATCCGGAGACAGCCGACAACTTCCTCCAAGTTGGGCTGGAGAGCCTCCTCATGTCTCCCACATACCTATCTCTCAGAGAGCTGGACGGCTTCAGGGACAACCTCGGTGAATACTGCAAGGAACTACAGCACGCAGGTAACGAGTACGACCCCAACGAATGTTTCCTTCTGAATGTATCTGTGGCTGTCGGTGAACTAGTGCCTAACAGACCTTCACCAAGGGTCCAAGCACCAACAGTTCGAAAATATGCAAAGGTATCCTTGGCCTCCTCAAGCCCTGACAAAAAGGTACTCAGGAAGGACAGCGAAATGGAAACCCTCATACTCACTCCGCCTCCAGGCACACCGGACATTGacaaggagggggaggagggaaggaaggccAGAGAGGTGTGCTTCGTCAATATCCAGCGCGAGCTCAGGACCAGGGGAGTCTTCCTACGTCACGAGTACCCCAGAATCTATAATCAGCTGTGTGGGTTTGTGGAGAGCAACAAAGGGTTCACGCCAACTACAATTTACCCAATAGATAAGAGAACAGGGAAACAGTTCATGTGCATGATCATGGCTGCATCCGAGCCAAGGACACTGGACTGGGTGGGTACCCCTCATCTCTTGGATGATATAATATAGTAGGCTACAGCACTAAATGATAATGATGTCAGCAACActaaatgtacatactgtaaatacatgGCGTGGTTTAGCAAATTGAGCGTTGATATGGAactgtgtgtatactgtatgtgaccaatctctctttctgtctctctcctcttctttctctctgtcgcCACAAACACAATGTCACTCGAGCGCGTGcgcacacaaacaacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78020 lncRNA upstream 107684 257568 ~ 259697 (+) True G58024
TU78015 lncRNA upstream 115309 245891 ~ 252072 (+) True G58021
XR_005639514.1 lncRNA upstream 154998 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA upstream 154998 210756 ~ 212383 (+) False LOC120560799
TU77996 lncRNA upstream 156705 209281 ~ 210676 (+) True G58011
TU78074 lncRNA downstream 164975 541890 ~ 572532 (+) True G58057
TU78181 lncRNA downstream 459664 836579 ~ 837861 (+) False lmx1bb
TU78179 lncRNA downstream 502339 879254 ~ 882251 (+) True G58151
TU78184 lncRNA downstream 515182 892097 ~ 892439 (+) True G58156
TU78185 lncRNA downstream 521978 898893 ~ 899506 (+) True G58157
XM_039803834.1 mRNA upstream 11028 340977 ~ 356353 (+) False syn1
XM_039803830.1 mRNA upstream 11028 340977 ~ 356353 (+) True syn1
XM_039803831.1 mRNA upstream 11028 340977 ~ 356353 (+) False syn1
XM_039803832.1 mRNA upstream 14198 340977 ~ 353183 (+) False syn1
XM_039804136.1 mRNA upstream 123187 223357 ~ 244194 (+) False LOC120561159
XM_039803355.1 mRNA downstream 4257 381172 ~ 432629 (+) True gapvd1
XM_039803356.1 mRNA downstream 4257 381172 ~ 432629 (+) False gapvd1
XM_039803362.1 mRNA downstream 17178 394093 ~ 432629 (+) False gapvd1
XM_039803358.1 mRNA downstream 17178 394093 ~ 432629 (+) False gapvd1
XM_039803357.1 mRNA downstream 17178 394093 ~ 432629 (+) False gapvd1
TU78000 other upstream 155011 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2501486 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3740364 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 4047226 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 4055256 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 4055753 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile