RNA id: XM_039804345.1


Basic Information

Item Value
RNA id XM_039804345.1
length 3480
RNA type mRNA
GC content 0.47
exon number 5
gene id dnajb5
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18270719 ~ 18280112 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctctctctctcttgctctctctctccaaataTGACTCTGTTTCCCTGCACAGTGAACCACAGCCTCCGACATGCCTGCTGCTCAGGCCGATCAATCTTACGAGAGGAGACAAGTAGCCTAAAGCACTGCCACTCTGTTTCTAATTCAAATTCTTAAATCAAACTTCACCCTAAATGTAACTTAAGCCAAAGTCTTCTTCGTGAGCAGACGTTGAACAAAGAGCCCTGCTGGTTGAGAGGGCAGGGTTTGCTCTCCAGACTGCAAACGGATTTTTTAGACACAGACAGGACCACTAATATCGGACACAAGGCAGCGGGCTCGAGCCTGTGATCCTCCCGACGTTCCTGACGTCAATTTATAAGGACCCAGCAGTGCCGGGGCGGCAGGCACATAACAAGGgctgaagaaaagaaagagattgAATCGCGGACCGGACCCTGTTGATGTGATATTCTTAATTTATTGCTGAGCATTCTGTGACTGACCACGGCCTGAGCTGAAGAGGGGGGGTCCCAATCCCGAgagtgtatgcgtgtgtgcagCTATGGGGAAGGACTACTACAAGACCCTGGGAATCCCCAAGGGCTCCAACGAGGAGGAGATCAAGAAGGCCTACCGGCGCATGGCACTGCGCTTCCACCCTGACAAGAACAAGGATGCCAACGCCGAGGAGAAGTTCAAGGAGATCGCAGAGGCCTATGAGGTACTCAGCGACCCCAAGAAGAGGGTCGTCTATGATCAGCTAGGAGAGGAAGgtttgaGGACAGGAGGCAGCAGCTCTTCAGGTGCTCCTGGCAGCTCAACGTACCACTACACCTTCCACGGAGACCCACACGCCACCTTTGCCTCCTTCTTTGGCGGCTCCAACCCCTTCGACATGTTTTTTGGCTCCAACCGCAGCCACAGCCGCTCTAATGGTTTCTCCTTTCACAACGACCATGACGCAGAGCAGGACATGGACATGGACGAGGATGACCCCTTTGCTCATATCGGGAGACAGTTCGGCTTTCCAGGGGGGATGAACAACGGCTTCCCAGGGGAGGGCCGCAGAAGGAGGGGGGTGCCGTCAGAGCGCCTGGGGACCGGGCGAAAGCACCAGGACCCTCCGGTGGTCCATGAGTTGAAGGTCTCGCTGGAAGAGATCTTCCACGGCTGCACCAAGCGCATGAAGATCACCCGCCGCAGGCTGAACCCGGATGGGCGCAGCATGAGGACAGAGGACAAGATCCTTAACATTATCATCAAGAAGGGCTGGAAGGAGGGGACCAAAATCACCTTCCCGAAGGAGGGGGACGAGACCCCTGAGAACATTCCTGCCGATATAGCCTTTGTGCTTAAAGACAAAGGGCACGTCCACTTCAAGAGAGATGGTTCCAATATCATTTTTAACTGCAAGATCAGTCTAAAAGAGGCGTTGTGTGGCTGCACAGTTAGCATTCCCACGCTGGAAAACCGCATCATCTCGCTCCCCTTTCATGACATCATCAAGCCAGGGACGGTGAAGCGACTCAGAGGGGAAGGCCTGCCTTTTCCCAAGAACCCGTCACAGCGCGGTGACCTTATCGTGGAGTTTTCTGTCCGTTTTCCCGACAGGATTCCTCCTCAGTCCAGAGAGATTATCAGACAACACCTCCCCCAGTCATAGGAAGACTCACCTTCAACCCTTCCACCACCACACACTCCAGACTAAATGGCCCAAATCGAGAAAACCAACCGTTAATACCTTCATTGTAGTTTTCCTTCCCACTTCCAGTCTCCATGTCCTGAGTTAATGCACGCAGCATTGAACAGACACTGTTGTTTGTAAGGACTTTACAGtgggaggatgaaggaagaatGCCTAGACAAAtggcagtttgttttgtttttggcccaagcacacacacacacacacacacacacacacacacacacacacacacgcacagacacctGAGTAGCGGAGCAGTGCTGAGGATGGACTCAGCACAATTGTGGCTTTTACCGGTCCTTTCTTAACTCTGTTTTATACGGATTCATCAGTGGTTTTATATGCTGTCCAACTCTCTGATCCTTGTCTTTTTGTGATAGGATGAATCGTgagatattttttaaaatatttttttttccaggatTTTCCTTTCCAAAGAAAGTTTCaaatatgattatttatttttaccttgAGTGTACCAGCAGCTTCAGTATGTTCAGTGCAAACCCCCCGGTTTTAACATAACCCCCCAGCCCCCCCACCTGCCACCTGCTTTTCTTATGCTTATAGTCCAATAAAGCATTGTGCTTGAAGTCTGTAGGCCATTTAGTAAGATCTGTCTCCCCTAAAATCAGTTGTATTGATGTACTGAGTGCAATGCCACCACACACTTAAAGTCCTGTGTTACTTCAAACAATATTAGCGTATCTCAGCTGCATTGGAAATCTTGGAATGACAATCATGTACAATAACAGCAGTGTAAGCTTGGATAATACAATCTGCACATGATATGGGTGCTTTCCCTTCTGAACTGAATAGCCTGGCTCGCTATCTGAGGGACATTTCGGTGCCTTAGCCACATATgtgaacactcacacacaggtcACACTGTAATAAACACAACCAGCCATGTTAGGGGCACAACAGATGATGCACTATGCTGTGTTAGACATTGCCATTGGAAGCTGGTGATCTTGGAAAACAGGTAAGTAAGCAATGTAATGTCAATCACCATATTGTATGTTAGCAAGGACATTTTTAGGGGAGAGATTTGATACAAAACTGATGAATTTTGCCAGTGCATCCCTGTAAAGTGCCATACAAGTACATGTTGGATTTCCCggagaaataaaagcatgaaattAATCGGAAGTCCACAGTAAATAGAGATTTTCTCAGGGAAATCCAGCTTTGTTGTGTATATTCTGCTTTCTCTTGTGCCATTTGAAGGCCATGTATCGGTGCTACTGTGAGCAGTGTCAAAAATAGACCCCCTTGGTGTCTACTTTTTTGTTTCATGGTTTCAATTTGTGATTTGATAATTGCTTCTGTCCTCTGTAACACGTGCACATCCAATTTTACGTCTGTTTTTTTCGAGTAGAAAACCCTGTTTGGGAAACAGGTTTTGTAATATTGCAGCAGCCGTTCTCTGTCTCAGCTGCAGGGAGCTCTCTGCAGCTCTTCCTACTGTAGTTTACAGCAATGATAAGATGTATGTGTGAGAATGGTTTATGCGGCCAACACTAGTAGGTCATATATATCTCATGTATGGAAAAATGTTTGAACCCAACATGTTGATAAATGCACTTTTATGTCATAAAAGATACCGACGAAACTTTAAGGTGATGATGGGAGAGACTTGAATGACCTCCGGGGACGCTGGACTGTGGCTACAACCAGAATGCACAAGGGCTGCTGCCGAAAGACTGTAACTGCTTTTGtgcatttgaaaatatttatgATCTTTTCATAATTGCAACAAATAAACCAAATGTGTGAACTTAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09511 DNAJB5; DnaJ homolog subfamily B member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83580 lncRNA upstream 141651 18128826 ~ 18129069 (+) False setbp1
TU83579 lncRNA upstream 142975 18127536 ~ 18127745 (+) True G62406
TU83529 lncRNA upstream 214571 18054799 ~ 18056149 (+) True G62372
TU83519 lncRNA upstream 253272 18015405 ~ 18017448 (+) False thbs4a
TU83482 lncRNA upstream 329874 17939027 ~ 17940846 (+) True G62344
TU83666 lncRNA downstream 13148 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA downstream 13148 18293260 ~ 18295306 (+) True G62484
TU83688 lncRNA downstream 33099 18313211 ~ 18314777 (+) True G62502
TU83694 lncRNA downstream 40531 18320643 ~ 18321158 (+) True G62508
TU83741 lncRNA downstream 85168 18365280 ~ 18388485 (+) True G62533
XM_039803282.1 mRNA upstream 2139 18245501 ~ 18268581 (+) True epg5
XM_039802123.1 mRNA upstream 25947 18239308 ~ 18244773 (+) True LOC120560024
XM_039804525.1 mRNA upstream 32721 18232728 ~ 18237999 (+) True riok2
XM_039802172.1 mRNA upstream 131386 18133647 ~ 18139334 (+) True slc14a2
XM_039802747.1 mRNA upstream 160207 18078085 ~ 18110513 (+) False setbp1
XM_039803088.1 mRNA downstream 2258 18282370 ~ 18287282 (+) True akr1a1a
XM_039803089.1 mRNA downstream 26786 18306898 ~ 18311633 (+) True LOC120560506
XM_039803094.1 mRNA downstream 46852 18326964 ~ 18328537 (+) True srrd
XM_039803095.1 mRNA downstream 46852 18326964 ~ 18328537 (+) False srrd
XM_039803104.1 mRNA downstream 65442 18345554 ~ 18357632 (+) False ddhd2
XR_005639579.1 other upstream 261402 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1736571 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1794815 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1794823 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2493579 15763114 ~ 15777141 (+) True mctp1a
TU83701 other downstream 50593 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 127275 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 136016 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 381045 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1154795 19434907 ~ 19448950 (+) False rasl10a

Expression Profile