RNA id: XM_039804348.1


Basic Information

Item Value
RNA id XM_039804348.1
length 4754
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC120561295
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27564959 ~ 27600806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAAATAGAGATGCACAAGCAGGCGGAGATTGTCAAACGGCTGAATGCAATCTGCGCCCAAGTCATCCCCTTCCTCTCTCAAGAGcatcagcagcaggttGTGCAGGCGGTGGAGCGGGCCAAGCAGGTCACCATGGCTGAACTCAACGCCATCATAGGAcagcagcagctccaggcTCAGCACCTCTCCCACGGCCACGCCATCCCAATCCCGCTCACGCCACACCCAGCGGGCCTTCAGCCCCCCCTACCCCCAGGGGCCGGTACCGCCAGCCTGCTGGCTCTGTCCTCCGCCCTGAGCCACCAGCTGCCGCTCAAAGACGAGAGGAAACACCACGACAACAACAGCAGCGAACACCCGAGAGACAGAGACTCGGTCAAGAGCTCATCTGTGTCTCCCTCGGCCAGTTTTCGGACCCGAGAGAAGCACAGGAGTTCAAGTGATTACTCCTCCGACAGCAAGAAACAGAAGACAGATGACAAGGAGTTGGCCTCTACACGCTATGAAAGCGATGGAGAGAAGAGTGACGACAACTTAGTAGTGGATGTCTCCAATGAGGATCCAGCGTCTCCTAGAGGAAGTCCTGCCCACTCGCCTCGGGAGAACGGATTGGACAAGAGTCGCCTGTTGAAGAAGGATGCTCCGCTGAGTCCGTCCTCCATCGCCTCCTCCAGCAGCACACCTTCATCCAAATCCAAAGAGATTAATGTGaATGAGAAGGCCACAACACCTGTGTCCAAGTCCAGCACCCCCACATCCCGCTCTGACGCCCCGACACCCAGCAGCACCTCCACCCCGGGCCTGAGGTCTGTACCCAGTAAACCGCCAGGAGTCGAGACGCTGGCTCCTGGTCTCCGTACGCCGTTGGCAGTGCCGTGCTCATACCCCAGTCCGTTTGGAATGGTTCCTCACCCGGGTATGAACGGAGAGCTGAGTGGAGCCGGAGCAGCCTACACCGGCCTGCATAACATTTCTCCACAGATGAGTGTGgtggctgctgctgcagtgGCAGCTTATGGACGCACACAAGTGGTGGGATTTGATCCTCACCACCACATACGTGTCCCTGGACTTCCTCCCAACCTCTCGGGCATTCCTGGTGGAAAACCAGCTTACTCCTTTCATGTCAGCGCTGATGGACAAATGCAGCCTGTGCCTTTTCCTCCGGATGCACTGATTGGCCCCGGCATCCCGCGCCACGCACGACAGATCAATACTCTCAGCCACGGGGAGGTGGTGTGTGCTGTCACCATCAGTAACCCAACGCGTCATGTCTACACCGGCGGCAAGGGCTGCGTCAAGGTGTGGGACATCAGTCACCCGGGAAACAAGACCCCTGTATCCCAGCTGGACTGCCTCAACAGAGATAACTACATCCGTTCCTGTCGGCTACTTCCGGATGGACGGACTCTCATTGTTGGGGGCGAGGCGAGTACTTTGTCGATCTGGGATTTGGCAACACCAACTCCACGAATCAAGGCTGAACTAACTTCGTCAGCACCTGCGTGTTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTTTCCTGCTGCTCTGATGGAAACATAGCCGTGTGGGATCTTCACAACCAGACTCTGGTTAGgCAGTTCCAGGGCCACACTGATGGAGCCAGCTGTATAGACATCTCTAATGATGGGACAAAGCTGTGGACTGGAGGCCTGGATAACACTGTGCGGTCCTGGGACCTGAGAGAGGGAcggcagctgcagcagcacgACTTCACCTCCCAGATCTTCTCACTGGGATACTGTCCAACGGGCGAGTGGCTGGCAGTCGGGATGGAGAACAACAATGTGGAGGTCCTTCATGTTACCAAACCTGACAAGTACCAGCTCCACCTGCATGAAAGCTGTGTGCTCTCACTCAGATTTGCTCACTGTGGGAAGTGGTTTGTGAGCACAGGAAAAGACAATCTGCTCAACGCATGGAGAACCCCCTATGGGGCCAGCATATTCCAGTCAAAGGAGTCGTCCTCAGTGCTGAGCTGTGATATCTCCATAGATGACAAGTACATTGTGACGGGCTCAGGAGATAAGAAAGCAACTGTCTACGAGGTCAACTACTAGGAAGGCTAGACCACTTCCATTCAGGCACTCTGCGGTGTCACCAACACCTATGTACAATTCTTAATGTATAAAATGGATTTAAATGGAACTAACCAAACAGACTCTTGGACAGGGGCgtttttcaacttcaaaatgAAGAAGCAGAACCgagcagagttttttttttttttttttttttcttacttgtgTCTTCTTAATTGTCttactttgttgttgttgtgaggaTGAATACATGTCCATGTGCACTGAATCTGGAGAGGATACTATTGACTAGATAACATTCCTAAACTTTTAGGCCTCTTTTTTACCAACATATTTGTACAGACAAGCAGCTACAACACAAGTGTAGTTGTTCACATGCTTTCCTTTCGTACTTTGTTATACCTGAAGGCTATAAAAACATTGTGGCTGGATCATTCCCGGCTGACACCAGAACATTTTCTCTGAGATCTtccaatttggcacaacataAACATACTTACCTAAAAATGGCAACACTTGAAAGGGTTACTATTGGTTCTTGTAAATATCACGAAGAAGTTTCTCTTcaaaactttgtttttctgttcaGAGTCTGCTGCCAACCTTATTCAACACCCTGATATACTGTTTATGTGCTTAATTGCATCTTTAAGGGGTGTAGCTTTCATTTCTGTAGATGCATatgacaaacacacaacaactatATCCAAGGCTTTATTCAGTAACAACTTCCTGTGGGtaaattgtattgttttgtgttttgaatTACTACTGTAAATACAgtgttgccattttttttttttttattacattttggttCTGTTTCCTGCTTGCCTTCAGGCACTTCATGTTAATACCTCATACCAAATttgccttttttaaatgttaatacactttttgtttgttatgtttgtctAAATTAGTAAAATCAGCATTCCACATgtgaaaaacatcacattttcatTCCATAACAAATGCATGCTGAACATAGTGATTACACAAACGAGATACAACATGTTGATTAGTGAGCTATACAGGTGCTAGTAAGCTGATTATGTTGCCagactttatgctaagctaagataactgGCTGTAACTTCATATTTACCTTTCACACGAGAGTTTGTAGATCTTCTCATCGAACTCTCAGCAAATTATCACTAAGtcactgcgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgcgctgcgaCCCAGTGGGAGTTGATCAAACAAACTCACAAGATTGCCCCCGGTCCCCTCACTACTGTGTGACCTTTGCTCTTGGTTCTGCCCCCTCAGTTCAGACTCCTCTGGATGCTCACTGGATTCTGTGTGACAGATTTCAGTGAAACTGTTTGATTGGTGTTTGGAGGTCAACCAGCTCTTCATTTCCTGCCTGGAGTTTTATGTTTGGACTTTTGGAAACTTTTCTGAAAAACAAGTGGTCAATGATACGCTTGTGATTTCTCTTGGATATACTTCTATCGGCTTGTAGAAATAACACAGTGCCTTTATGCTGCTGCGCTTCTGATTCCATTTTGTCCTGCTGAGGGTTCAACTACACAGAGATGAAACGTGATGGACTCTGCTATTaggtttttaacaaaatactGTTTTTGAGTTCAACATTTAAGGAtgaattttattaaaaaataaataataataaaaagatcaGTCATGAGCAAATTAACACAAACGGTAACCCAGATTATCCAGTCCAATTTGTATCGATTGTCTGTTGTTCACTTTGAAGTAATCAGGACCAAACTCCTCTTTGTCACCCGCTTTGCTTAACAAATGCACGGTATGGAAAATATACTATTCATGGCTACTGCTGTCTCAGTCTGATTGTTTGAAGTATGGTGCCATTAACTACAAGTTTTTGAAGCTACAAAATTCTTCACCATactttttctttctgctttCAAGCTTTGTTCTTTTGCCCAAATGGCACTCGCCTCACTTGTATTGTTATTTTAATCCCAGGAGTTGCATATTATAGCTTTATCTTCCAGTTCTAGACTCCTTGAGTGCAAAAGACGTGCTCAACCTGTAAATCAAGAAGGAAAAGCAGGTAGCAATGAGCCAAGAGAGATTTCCAGGTTTTACTGTTTATGGGATTAAAATAACATAAGGATTGGTTATTCTCTCTGATTTACTTTTCAAACTGATAAAGGGTGCAGTGTTCATACCTAGTTCTAACCTGCCTGACACCTAACTTCCTGTCTTTTACTGTAGGTCTGAATAGTTAGAtattaaaatcagaaaaagatCAGTATGTGTGAGTCTGGGACACTCATGCAAGTATTAAGTCTTCTCTAGGTTTCTGAGCATGCCCTTCTCGAGTTAAATGCCAATGAGAAACCTATTTAAAGATtgccatttcatttttaaatgtctttaggATATTTTTGTGGCTGTGACACAGACATAATCAATTTGAGTTGAAGAAACTACTGATAATAACTGCACTGGTGTGAATGTAAAGGGACATTTTGCAGCAAAGCCACTGAGACTTAGTCTAATGAGTTTGATACAGGAGGGACCCTATGTAAGATATTACACTGTTACGACTGatatttttgtaatttctttgacagacacacacagtgacactgtactgtgtttgtttttcacagTGTTTGCCTTATTCTGTGCTTTCTTTCTAAATT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87249 lncRNA upstream 87993 27476748 ~ 27476966 (+) True G65171
TU87150 lncRNA upstream 175097 27389457 ~ 27389862 (+) True G65108
TU87147 lncRNA upstream 185744 27378998 ~ 27379215 (+) True G65106
TU87122 lncRNA upstream 194000 27299932 ~ 27370959 (+) False G65084
TU87119 lncRNA upstream 214404 27299932 ~ 27350555 (+) False G65084
TU87374 lncRNA downstream 302269 27903075 ~ 27904933 (+) True G65272
TU87444 lncRNA downstream 401733 28002539 ~ 28005121 (+) True G65314
TU87497 lncRNA downstream 770650 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 861819 28462625 ~ 28463104 (+) True G65378
TU87522 lncRNA downstream 1020279 28621085 ~ 28621299 (+) True G65385
XM_039803550.1 mRNA upstream 27138 27529250 ~ 27537821 (+) True psat1
XM_039803548.1 mRNA upstream 37076 27521322 ~ 27527883 (+) True kiss1rb
XM_039803551.1 mRNA upstream 44519 27516790 ~ 27520440 (+) True LOC120560745
XM_039803552.1 mRNA upstream 48370 27510426 ~ 27516589 (+) True isca1
XM_039803647.1 mRNA upstream 55324 27485702 ~ 27509635 (+) True tut7
XM_039803964.1 mRNA downstream 7302 27608108 ~ 27624072 (+) True mccc2
XM_039804592.1 mRNA downstream 26172 27626978 ~ 27661781 (+) True tmem8b
XM_039804004.1 mRNA downstream 87630 27688436 ~ 27705623 (+) True tars1
XM_039802054.1 mRNA downstream 263722 27864528 ~ 27874956 (+) True cenatac
XM_039802608.1 mRNA downstream 274988 27875794 ~ 27924222 (+) False LOC120560289
TU87117 other upstream 263189 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 906990 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 922478 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 1068631 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1749318 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2586042 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2646081 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2647133 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2647177 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile