RNA id: XM_039804352.1


Basic Information

Item Value
RNA id XM_039804352.1
length 3433
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC120561296
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28940542 ~ 28955828 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAGTCGATCTGGGATAATAACAGTCTCAATACCCTGGACAAGCTTCATACTGTTACATGTGTTGTTACTGTGCTGTTACTGTTAATGTAAACAAAGCAGGTTTCTACCAGCTGCAGACCGTTTGTGTGTCAAGTTTCAGGTCTTTTTAACCTCGAGGAGCCACAAGCTTTGCTCAAGCTTGTTGGTGGATCTTTAACTGGTCGACACGGCCTTGGCTGCAGGTGTTGATTGCGCAAGTCCTTTAAGCTCTGGTCAGAGGCGTGAGTGCATAAGAAGTCGGTATGCATTCATGCAAGTCCACTAAAGGACGAAATTTCCTCCAGGGGGTAACAGTTCGAGCACTTGTGCCGGGCAAAGGTTGATCCAGGTCTGTCCTATACCTGACAGCTACTGTCAATCAGCTGTGACCAAGAAGAAGATAGTTTTCTCTGCTATTCCAGCAAATACAAGATGAATGTGGAAAAGGATTTGGTTAGGAGCAATGGTGTTGCAGTCATGGATGGTAAAGCTGAGAGCATGTCTACCCAAAAGGCACAAACTGTGTCAGACTCCACAAACTTAAAGACCCACTCCACTCTCATACATAACGGAGGAGCCACCAAAGCTGTGCTCAATTTAACATCTGAGCTGGAGAAAGCCACTGAAGAACTTTCACTAGAAGAGCCCAAGGCAGTTCCCCTTTCAACGGCAACTGCACCAACAACTCTGGCCCCAGCTGACCAGCTATGGAGCACCAGCAGAGACAAGGCAGTAAGACTGAGGATGGAAGGCTCAGGTCCGGCCTCAGAGACTCCTGTGACTATCCATCAGATGTTCCTGGAGACGGTGGGAAAGTACGGGGATCATCCAGCCTTGGTTTCCAAAAAAGGGGGTCAGTGGGTGACCCTGACATGGAAGCAATACTATGAGCAGTGCCGAGCAGCAGCTAAAAGTTTCCTCAagTTAGGGCTGGAGCGTTACCATGGTGTGGGGATTCTAGGATTCAACTCCCCCGAGTGGTTCATCTCAGACATCGGCTGCATCTTTGCTGGGGGACTGGGAACAGGAATTTACACAACCAACACGCCCGAAGCTTGTCAGTATGTGGCTGCCAGCAGTGAGGCCAACATCCTAGTTGTAGAGAACCAGAAACAGCTTGAAAAAATCCTACAGGTTAAAGATCAACTCCCTCATCTGAAAGCCATTGTCCAGTATAAAGGCGAGCTGCAGCAGAAAGCACCATTCCTGTATACATGGGCAGAGTTTATGAAACTGGGAGAGGAAGTGCCCGACGAGCAGCTGAATGCTGTGATTGACAGTCTTCGGGCCAATGAGTGCTGTACTCTCATCTTTACCTCTGGAACCACTGGCAACCCTAAAGGAGTCATGTTGAGCCATGACAACCTGACATGGACAGCCTACACAGCATGTTCCATTGTAAATCTTAAATACGCTGAGGAGGTGGTGGTCAGTTACCTGCCGCTCAGCCATGTGGCAGCCCAGCTGTGTGACATATGGATGGCTAGTAGGTTTGCCATGACCATCTACTTTGCAGAGCCAGACGCCCTCAAGGGCTCCTTAGTAAACACACTGAAAGAGGCTCGTCCAACTTGTTTCCTGGGGGTTCCTCGTGTGTGGGAGAAGATGCAGGAGAAGATGAAAGCTATCGGTGCCAAGGCAACCCCAATGAGGAGGACAGTGGCGGGCTGGGCCAAGTCCATAGGCCTGCAATACAACTACAGTGTCATGAACGGGGAGAATCGGGTGCCGTGGGGATTCATGCTGGCTAATAATCTGGTCTTTAAGAAGGTCCGGGAATCGCTGGGCTTAGACCGCTGCAAATACTGCTTCACAGGTGCTGCCCCCATCACCAAAGAAACTCTGGAGTACTTCATGAGCCTAAACATCCCTTTGTTGGAGCTATACGGCATGAGTGAATGCGCCGGCCCACACACCATCTCTGATAACCAGAGTTACCGCATCACAAGCTGTGGAAAGTTGATGCCAGGCTGCAAGACAAAGCTGGAGAACCCAGATGAGGACGGGAGTGGAGAGGTATGTTTCTGGGGTCGGCACGTCTTTATGGGCTACTTGAACATGCCAGACAAAACAGCCGAGGCTCTCGACCAGGACGGCTGGCTGCACTCTGGAGATCTGGGAAGGCATGACCAGAACGACTTCCTGTACATCACAGGAAGGATCAAGGAACTGATCATCACTGCTGGTGGAGAGAACATCCCTCCTGTGCCAATCGAGGATGCAGTGAAGGCCGAGGTGCCCATCATCAGCAACGCCATGCTGATAGGAGACAAGCTCAAGTTCCTCTCCATGCTGCTCACGCTCAAATGTGTCGTGGACGACAACGGCGAGCCCACAGACGAGCTGAGCCACGAGGCTTTGAGCTTCTGCCAGCAGCACGACGTGACGGCAACCACGGTGTCAGAGATCATAGCAAATAAGGAGCCAGCTATCTACAAAGCCATTCAGGAGGGCATGGAGCGTGCTAATGCCAGAGCAACGTCCAATGCCCAGAAGATCCAGAAGTGGGTCATACTGGAGCGAGACTTCTCTGTCACTGGAGGAGAACTGGGACCCACCATGAAACTGAGGAGGCCCATTGTGGTGAAGATGTACcaggagaaaataaatgaattgtATGCAGTGGCCACGGAAACACAGTAAACTTTACTGCACACAGATTAGATAATATTGAAGAGGCTTGGGGCATGTTTATGAATATTGTATTTTGCCCAGACGTCATgttgaaaaatatatacaactCTTTTCATCTGAATGTTAAAATTGCAAGAGGTTTATAATTTTAGAGGAAAAATAATCTTTATTCTGATTATGTTGTATTTAACGGAATAGAGGTTTGTGCTGCTatgttatttgtttctgttgacTATTCAAAGTCAATATTAAAGCTGTTGAATGTACATACGGTTCACAGCAGCTGTGCATGTTTTGTAAATAAAGCATCCAAATCAGAGCCAAACCATTTACTGAATGGCAGGTGAATTGCACACTATCACACTGGAAAAAACACTGAACGGTGTCAGTCatccttttacagtttttgaagGAAAGTTTGTGAATCCACTGTGGCCTGAAAGATGAAACTCTCTTGTCTTGGTCATAAGCATAATggcatgtattttattttttctgcagCAGTATCTAAATATTTGTACAGCATTAATTGCCAGTTCCCATGTCTCATGTTGTAAAATAATCCCCATCTGGCAAAGCTGCAGATATttcttatatatttataataagataataatatcaagttagtttaataatttatacaatcaagtgtaaaaaaaaaaatctattttaattTGTGCTTCTCCATGTACAGTTTgacaaatattaaaaatgttGATATTTTGATAGATATTACATGattgtcaataaaataaaagtaagtgATTTGGATAAATTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15013 ACSBG; long-chain-fatty-acid--CoA ligase ACSBG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87569 lncRNA upstream 93295 28845626 ~ 28847247 (+) True mboat4
TU87556 lncRNA upstream 124142 28816185 ~ 28816400 (+) True G65418
TU87555 lncRNA upstream 125066 28815254 ~ 28815476 (+) True G65417
TU87533 lncRNA upstream 174317 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 184349 28755865 ~ 28756193 (+) True G65394
TU87618 lncRNA downstream 29785 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 117113 29072941 ~ 29131216 (+) True LOC120560778
TU87732 lncRNA downstream 122598 29078426 ~ 29098313 (+) True G65565
TU87739 lncRNA downstream 148160 29103988 ~ 29105609 (+) True G65570
TU87928 lncRNA downstream 591621 29547449 ~ 29614880 (+) True G65710
XM_039803186.1 mRNA upstream 1900 28934966 ~ 28938642 (+) True hint2
XM_039803185.1 mRNA upstream 12694 28918006 ~ 28927848 (+) True emb
XM_039803180.1 mRNA upstream 23932 28902756 ~ 28916610 (+) True malt1
XM_039803181.1 mRNA upstream 23932 28902756 ~ 28916610 (+) False malt1
XM_039803182.1 mRNA upstream 23932 28902943 ~ 28916610 (+) False malt1
XM_039802639.1 mRNA downstream 7585 28963413 ~ 28979486 (+) True LOC120560307
XM_039804024.1 mRNA downstream 57778 29013606 ~ 29016925 (+) True zgc:158260
XM_039803751.1 mRNA downstream 80187 29036015 ~ 29040470 (+) False LOC120560871
XM_039803750.1 mRNA downstream 80356 29036184 ~ 29040829 (+) True LOC120560871
XM_039802796.1 mRNA downstream 86112 29041940 ~ 29050224 (+) True LOC120560378
TU87117 other upstream 1638772 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2282573 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2298061 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2444214 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 394296 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1231020 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1291059 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1292111 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1292155 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile