RNA id: XM_039804358.1


Basic Information

Item Value
RNA id XM_039804358.1
length 1437
RNA type mRNA
GC content 0.52
exon number 8
gene id ctsla
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31670525 ~ 31675115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTGGGGGCGGGgcagaccaatcagagagcTCGGTGGGACGTTCTTCAGCGGCCAGCCAGGCCTTTATAAACTTGGCGTACCTCGACCAAAGGATATCTTCTGCTTCGTCTTCATCCTCGACTTGGAAGAATATACATATATAGCAACAATGCTGCCTCTAGCCGTGTTGGTCGTGTGCCTTAGCGCAGCCTTCTCCGCCCCCAGCCTGGACCGTCAGCTGGATGACCACTGGGACCTGTGGAAGAGCTGGCACAGTAAAAATTATCATGAgaaGGAGGAGGGCTGGAGGAGAATGGTGTGGGAGAAGAACCTGAGGAAGATTGAGATGCACAACCTGGAGCACTCCATGGGCGCACACACTTACCGCCTGGGCATGAACCACTTTGGAGACATGACTTACGAGGAGTTCAGGCAGATCATGAACGGCTACAAGCACAAAGCCGATAGGAAGGTCATGGGGTCCCTGTTCATGGAGCCCAACTTTCTGGAGGCCCCACGTTCTGTGGACTGGAGGGACAACGGTTACGTTACTCCCGTAAAGGACCAGGGTCACTGTGGCTCTTGCTGGGCTTTCAGCGCCACTGGCGCTCTGGAGGGTCAGGTCTTCAGGAAGACTGGCAAACTGGTGTCTCTGAGCGAGCAGAACCTGGTGGAGTGCTCCAGACCCGAGGGCAATGAGGGCTGCAACGGCGGTCTGATGGACCAGGCCTTCCAGTACGTCAAGGACAACCAGGGCCTGGACTCTGAGGAGTCCTACCCATACCTGGCAACGGACGACAAGCCATGTCACTACGACCCCATGTACAACTCTGCTAACGACACCGGGTTCGTCGACATACCCAGCGGTAAGGAGCACGCTCTGATGAAGGCCGTAGCTTCCGTGGGACCCGTTTCAGTCGCCATCGACGCCGGCCACGAGTCTTTCCAGTTTTACCAATCAGgAATCTACTACGAGAAGGACTGCAGCAGCGAGGAGCTGGACCACGGCGTGCTGGCCGTGGGTTATGGCTTCGAGGGAGAAGATGTGGATGGCAAGAAATACTGGATCGTGAAGAACAGCTGGAGTGACAAATGGGGAGACAAAGGCTACATCTACATGGCTAGAGATAGAAAGAACCACTGTGGAATTGCAACAGCAGCCAGTTATCCTCTCGTTTAACGTTTGCACAGCTCCACTTTCTAGCTCCATAGTGTGCTTTTTTTTGCAATAGCTTGGCTGACAGCAACTGACGAGGCTTCGGTCAGGAAGACATCAGCAGGAGATTGTGATGTTTTATGGAGAAACACTGTTTTTAGGCAAATGGCGCCATTTTGTGTTTGGCTGGTTTTATGCcactttgtttttctaaaaacatttttagtctggtgttttctttgtaaatatGTAATGCTACTTCGGTAAGTGATACATTAACACTTTGatcattgtaaatgt

Function

GO: NA

KEGG:

id description
K01365 CTSL; cathepsin L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88467 lncRNA upstream 160169 31461798 ~ 31510356 (+) True G66117
XR_005639425.1 lncRNA upstream 185524 31478501 ~ 31485001 (+) True LOC120560111
XR_005639426.1 lncRNA upstream 185524 31478501 ~ 31485001 (+) False LOC120560111
TU88421 lncRNA upstream 252265 31409955 ~ 31418260 (+) True G66107
TU88405 lncRNA upstream 261369 31351198 ~ 31409156 (+) False G66092
TU88479 lncRNA downstream 84073 31759188 ~ 31763725 (+) True LOC120561307
XR_005639580.1 lncRNA downstream 87871 31762986 ~ 31763773 (+) False LOC120561307
TU88608 lncRNA downstream 531804 32206919 ~ 32209511 (+) False adamts3
TU88639 lncRNA downstream 573886 32249001 ~ 32249240 (+) True G66253
TU88641 lncRNA downstream 615657 32290772 ~ 32291019 (+) True G66255
XM_039803081.1 mRNA upstream 10258 31570042 ~ 31660267 (+) True dapk1
XM_039803521.1 mRNA upstream 105362 31513308 ~ 31565163 (+) True LOC120560726
XM_039802281.1 mRNA upstream 180999 31485063 ~ 31489526 (+) True LOC120560109
XM_039802283.1 mRNA upstream 180999 31485063 ~ 31489526 (+) False LOC120560109
XM_039804031.1 mRNA upstream 209081 31456500 ~ 31461444 (+) True LOC120561065
XM_039804361.1 mRNA downstream 24411 31699526 ~ 31757504 (+) True kank1a
XM_039804359.1 mRNA downstream 24411 31699526 ~ 31757504 (+) False kank1a
XM_039804360.1 mRNA downstream 31255 31706370 ~ 31757504 (+) False kank1a
XM_039804362.1 mRNA downstream 50982 31726097 ~ 31757504 (+) False kank1a
XM_039804489.1 mRNA downstream 95177 31770292 ~ 31802453 (+) True dmrt1
TU88223 other upstream 784360 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 1092366 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 1419006 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 1420257 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 1420285 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 134517 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 451178 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 647392 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 689745 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 896573 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile