RNA id: XM_039804374.1


Basic Information

Item Value
RNA id XM_039804374.1
length 3675
RNA type mRNA
GC content 0.53
exon number 25
gene id adgrd2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13567559 ~ 13646350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCCCAGCAAGGAGATCAGAAACTCTACTGGATATGCTGGATATTGAAGCCAAGGTACTGGATGAGAAGTCTGGACCAGTTTTAGATTTGATCATACCACACATGGAGTCTGTTCCCAGATTACTGAAAGAGACTTTCTGCTGCTTTAGAGGAAAATGGGGAGAGTGCAACAATGAATAAGGACATTCACTCCAGAATTTTTGAAAACTACCTGTTGAAGAGCGACACACTAATAGAGTCTTGTATTCATTTTGAGACTTTTTTTGAATTGAAGTACATCTGGATCCAGCGGAAATATTATTTTCTAGGTGAAATCAGTGGTTTATTTCAGCTGGAGACTACACTGGCTTAGAGATGACTGGAGCCCTGCACACTGGACTCATACTCTTCTCATTTGTGgtggtgtgtgagagtgagccAACACATCCTGGGCCAGACAGAGTGGAGGATTCACATGGACAATCCAGACTGGTCCATCTAACTTCTCACTGGGCCTTCCAGCTGGTCAATGACTCACTGGCCTTCTCCGGGGCCGACAGATTCTGCAGAGGCCAGTTCAGCTCCCTCGCCACCGTGGAACAGTCAGAGGACCGGGAGGGAGCCTTGGAGCTGCTTCGGCGGACTGGACATCGCTTGCCTATCTGGGTCAGGGACCCAAACAAAGCAGCCTCCAAGCCTGTGGCCCTCTCCAAACAGTATTTACATTTCTTAGCTCTAAACTTCCCAAAGGACTCCCTTGAGGGCTTTGCTCGTGTCAACGTGTCCTTTCCAACCCTGTCgtccatcagtgtgtgtgttcgagTTCAGTGGAACTCAGAGTGGAATCAAGTGTCCACCATCTTCTCGTACGCTGCACCTGTCTTTACCAATGAGTTCCAGCTAAGAGGTCAAGTGGACATGCAGGGACGCATCCTCCTGGCGCTTATCATCCATGGGAAGCACATGCCGTATAAGGCGTCCTTCCCCAACGATGGAGATTGGCATCACGTCTGTGTCGCTTGGCGCCGGAGCAGCAGCCACTGGGCTATCTATGTGGATGGGGAGATGAAGGACATGGGCACAGGCACAGACACTTCCAGGGATATATATGGGGATGGGATTTTCATTCTGGGTCAGGACCAAGATTCATTTGGAGGGAATTTCACAGAGCCCTTTTTTGGAAATATCACTGACCTGAATGTTTGGAATATGTCTCTGGAAACAAGGCATGTCCGTGCCCTCAACGCATGTTCATCCCTGACCCAGGATGTGCTTTTCAGTTGGAATCTTGACCACCTAAGCAGGCACCCAGCGGTCAGAGAGGTGCAGGTCCTTCTGTTTTGCTCAGCAGTGCACCAGCAGATGGAGCTGCAGGGCTGCAAGATGCTCCAGGGCTGGGCTGATCGGCTGCCAGTGTTCGGCCTGACAGACTGCTCGGATCCACTGCCGTTCATCTGCCGGAGCAGCACAGAGCGTTACCTGAGGATGAAGCAGATGAGTGATTCTCAGAACTCCCAGCCCACAGCCTTCATGAACCATCTGATGAAGCTTTCCAACAAAACCCAGgCGATGCTGGGGCAGCAGCCGTCAGGGCTGGACAGCCTGGCCCAGGCATCCGCCCTGCTGGACATCTCTGTCCAGGCCCTGGAGGACACGCAGCAGGAAGGGCTGCAGCCGACAGACATGGTGTCCCTCATCCAGCTGCTGTCTCTGGCTGCTGACGCCCCCCCCACACAGCCACTCAGCGGGGCCACCAACCACAGCCAGGACACCATCCGGGAGCTCAGCCAGCACTTCATCAGCGTGGCCGACAGCATCATCAGCCAAGACAACGGCCTCAAGTGGGAGGCCATCAAAGAGGTGGTGAACGGCCCAATGGATGTGGTCAAGAGTATTGACCGGATGTTGACCAGCCTGAGCCCTCGCTTGCTGGAGGAGACTGATCGCCTGACCATTAACAGACCCAACATCAAACTGGAGATGCAGCAGCAGATGCTGCAGGAAGGATCCAGAGGCTCAAGTTTCTGTGGGCCTGAGACAGGGAAACACACCAACCTAGACTGTATTTCAGTCCCACATCAGAAGATACAAGATCTCCGTAACAATGGCTTCCATAAGCTCACGTTGGTCAACACGTGGTACGGCTCTTTGCGGCCTTTCAATCCGGAGGGGAACCTCACCATGGTCCCTACTGTCACCGATGGCAGCCAGAGGTATTTGGGCACCATCCTGGGCTCTTCTGTCATGTCCACCACAGTGCTGGGAGACGACCAGCCGGTTAGCACAGCAGTTCGCTTCCAGCTCCAGCACAGAGTACAGAATCCCGCTGGTACTGTGTATGATCCAGTGTGTGCCTTCTGGGATTTTGATCTCACTCCCGAGGGCGGTGGGTGGTGGAATACCAAAGGCTGTGATGTAGTCTCCAAAGAATATGGATACACTGTGTGCTACTGCAACCACACCACCAATTTTGCATTGCTGCTGCAGGTTTATGAAGCCCAGAGGAGCCCGGAGAACGAAAAAGCTCTGCAAGTGCTGACGTTCATCGGCTGtggagtgtctctgtgtggccTCCTCTTCACCTTCATCCTCTTCATCGCTGTGGGtgtcCCTAAATCCGACCGTACCACCGTCCATAAGAACCTGATCGTGGCTTTGGGCCTAGCTGAGTTGCTGCTGATGTGCAGTGACTGGGCGTCTGCCAATGAGGCAGCGTGCTTCGTGGTGACTGCACTACTCCACCTCTTCTTCATGGCCTCCTTCTCCTGGATGCTGGTGGAGGGCCTGCTGCTCTGGAGCAAAGTCGTGTCCGTCAACATCAGCGAGGACCACAGGATGAAGCTCTACTACATCATCGGCTGGGGACTACCTGTTCTGATAGTTGGTGTAACAATGGCAGTATCAGTGGATGAGTACAAGGCAGATGATCACTGCTGGCTCAATGTGAAGACTGACACCATCTGGGCCTTTGTGGGACCTGTTATATTTGTCTTAGCGGTCAACGCAGTTGTGCTGTTCCGGGTTGTCATGGTGACCGTCTCCAGCGCTCGCCGCCGCGCTAAGATGCTCAGTCCAAGCTCGGCAGCAAAGATGCAGACCTTTGACCTCACCTGggCTGTGACCCGTCCAGTTCTCATCCTGCTGCCAGTTCTGGGTCTGACCTGGCTGTGTGGCGTGCTGGTCCACCTGTCGGTAGTAGTCGCCTATGTCTTCATTGCTCTCAATGCCACCCagGGCCTGTACATCTTCTTAGTGTATGCTGTTTACAACAGTGAGGTGAGGAATGCCATAAAGAGGatcaaagaaaagagaaaggccTTATCTTTCACGAACTGTTCCCAGCCAACCAGCTTCCTACCTTCCCAGAGGGCCCCGATCACCTCCTGGGGCCGCAGTCCACTGACCCCCTCCAGCCCTGAGACCAGTGAGACTTCTGGACCGCCCAGCTCCACCTCCACGTCATTGGTCATCAAGAACGAGAGCTTCAGAAAGGAAAGCCTTGTGAGTTTCtctttgaaaccagcatcaggaAACCAAGTGGTCCAGCTGACTGGGTTCAAGCCATCAGGTTGCTGATGGAGTGGATCCTGATACTTGGCTACAATACGCACGCATCCCGCTGAAAAAGAATGGAGAgctggacacagacacagatccCACCTTAAGAAGTGCACTGccgacacacgcacgcacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82051 lncRNA upstream 142608 13424751 ~ 13424951 (+) True G61232
TU82008 lncRNA upstream 383109 13182619 ~ 13184450 (+) True G61194
TU82005 lncRNA upstream 385251 13181582 ~ 13182308 (+) True G61192
TU82004 lncRNA upstream 385302 13181582 ~ 13182257 (+) False G61192
TU81973 lncRNA upstream 387068 13170793 ~ 13180491 (+) False LOC120560904
TU82069 lncRNA downstream 1793 13647297 ~ 13651464 (+) True G61244
TU82079 lncRNA downstream 33763 13679267 ~ 13679593 (+) True G61254
TU82080 lncRNA downstream 34709 13680213 ~ 13680865 (+) True G61255
TU82083 lncRNA downstream 38492 13683996 ~ 13684206 (+) True G61258
TU82084 lncRNA downstream 41127 13686631 ~ 13686912 (+) True G61259
XM_039804576.1 mRNA upstream 201349 13349141 ~ 13366210 (+) False lhx2b
XM_039804575.1 mRNA upstream 201349 13349142 ~ 13366210 (+) True lhx2b
XM_039803795.1 mRNA upstream 387190 13132098 ~ 13180369 (+) True LOC120560904
XM_039803769.1 mRNA upstream 634560 12909814 ~ 12932999 (+) False bcl2l16
XM_039804375.1 mRNA downstream 224178 13869682 ~ 13902649 (+) True LOC120561313
XM_039802081.1 mRNA downstream 299534 13945038 ~ 13961157 (+) True LOC120559997
XM_039802082.1 mRNA downstream 299534 13945038 ~ 13961156 (+) False LOC120559997
XM_039804110.1 mRNA downstream 340727 13986231 ~ 14000271 (+) True atad1a
XM_039804269.1 mRNA downstream 502066 14147570 ~ 14188917 (+) True piwil2
TU81938 other upstream 643723 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 643723 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 1640958 11926183 ~ 11926601 (+) True G60897
XR_005639563.1 other upstream 2815119 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 461979 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 495938 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 637913 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 672035 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 672035 14317539 ~ 14319506 (+) False G61390

Expression Profile