RNA id: XM_039804380.1


Basic Information

Item Value
RNA id XM_039804380.1
length 1635
RNA type mRNA
GC content 0.58
exon number 9
gene id nr6a1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13740353 ~ 13864440 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGACCTCAAGCCAAGCTGTGACCCCGGGGCTTGAACTCTGCGGTCATGTGACTGGGCAGTAAAGTGACCAGTGGTGTTGCTCCGCTCTGGCTGTGGTCAGAGAGGGACAGGCTGTCGAAGAAAGAGGTtgctgggagagagagagagagagagaactgaggcagagaaagaacagagagtcATGAGGCGACCAGGCCCAGTGGCTTTTTCTTAGCCTAAGTCCGAGCTTGAATGGGGTCCAGGCAGACTGGGAGAAGCATGAAATGGATACATGGGAAGATGATCCAGCGGACCAGCGAACTTGCCTTATCTGTGGAGATCGCGCCACAGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTTAAGCGCAGCATCTGCAACAAGCGCGTGTACCGCTGCAGCCGCGACAAGAACTGCGAGATGTCGCGCAAGCAGCGCAACCGCTGCCAGTACTGCCGCCTGCTCAAGTGTCTGCAAATGGGGATGAACCGCAAAGCAATCAGGGAGGATGGCATGCCAGGAGGGAGGAACAAAAGCATCGGGCCTGTTCAGatcACTGAGGAGGAGATAGAGCGGATCATGTCGGGCCAGGAGTTCAAGGAGGATGCCCCGGAGCACACCTGGGGCACCAACGGCGACAGTGACCACAGCTCTCCGAGCAACGGAGCCTCGGAGGGCAACCAGCCGTCACCTGCCTCCACCCTTTCATCCAACCGCTCCGTGGAAATGAACGGCTACACGGCGGCCCTCAGGGACCAATACATAAACACCTCCATGTCCACACACTATCAGCTCCTGCCTCACCTGTTCAGCTACGCGGCCCAGTCCGGCCTGCTGGCCCCCCAGCCCCGCAGCCTCTACCCACAGTCCCACCCACTGGTGCTGCAGCTGGTGGCTGCTGAAGACCTGGCCCCCCTGGCAACCCCTATGCTCATAGAAGACGGGTACAAAGTGACCCAGGTGGAGCTGTTTGCGCTGCTGTGCCGCCTGGCGGACGAGCTGCTCTTCCGCCAGATCTCCTGGATCAAGAAGCTGCCGTTCTTCTGCGAGCTCTCCATAGAGGACTACACCTGCCTGCTCAGCTCCACCTGGCAGGAGCTCATCCTGCTCTCCTGCCTCACCATCTACAGCGCTCAGATCTTCGGAGACCTGGCCGACGTCACCGCCAAGTACACGCCGTCTGACGACGAGCTGCAGGGCTTCAGCGAGGACGGCATGGAGGTGATGGAGAGGTTGATATATCTGTTCCGCAAGTTTCACCAGTTGAAGATCAGCAACGAGGAGTATGCCTGTATGAAAGCCATCAACTTCCTCAACCAAGATATCAGAGGATTGTCCAACATCTCCCAGCTGGAGCAGCTGAACAAGCGCTACTGGTATGTGTGTCAGGACTACGCTGAATACAAGTACCCGCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGTCTCCCGGAGATCCGCTGCATCGCAGGGAAGCTTGTGAATGTCCCTCTGGAGCAGCTCCCACTCTTGTTCAAAGCAGTCTTGCACTCCTGCAAATCCAGCCTGACCAGCTACAGGACCGGCCCGTCGCCCTGCGTGACCACCTCCTCCGGAAACTAGACCGACCTCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82099 lncRNA downstream 60900 13679239 ~ 13679453 (-) True G61274
TU82098 lncRNA downstream 70284 13669821 ~ 13670069 (-) True G61273
TU82096 lncRNA downstream 93032 13645392 ~ 13647321 (-) True G61271
TU82068 lncRNA downstream 175790 13564214 ~ 13564563 (-) True G61243
XR_005639414.1 lncRNA downstream 308619 13415069 ~ 13431734 (-) True LOC120560059
TU82130 lncRNA upstream 43522 13816900 ~ 13817523 (-) True G61301
TU82131 lncRNA upstream 46132 13819510 ~ 13819728 (-) True G61302
TU82133 lncRNA upstream 82863 13856241 ~ 13856771 (-) True G61304
TU82162 lncRNA upstream 239958 14013336 ~ 14013562 (-) True G61328
TU82168 lncRNA upstream 307949 14081327 ~ 14081555 (-) True G61334
XM_039804377.1 mRNA downstream 53447 13649892 ~ 13686906 (-) False LOC120561314
XM_039804376.1 mRNA downstream 53447 13649892 ~ 13686906 (-) True LOC120561314
XM_039804294.1 mRNA downstream 645857 13084483 ~ 13094496 (-) True LOC120561257
XM_039803114.1 mRNA downstream 679560 13059490 ~ 13060793 (-) True LOC120560514
XM_039804297.1 mRNA downstream 701906 13036828 ~ 13038447 (-) True LOC120561259
XM_039802083.1 mRNA upstream 189765 13963143 ~ 13972136 (-) True LOC120559998
XM_039802118.1 mRNA upstream 334025 14107403 ~ 14142258 (-) True htr7c
XM_039803876.1 mRNA upstream 473105 14246483 ~ 14248811 (-) True LOC120560956
XM_039802862.1 mRNA upstream 482319 14255697 ~ 14260239 (-) True LOC120560399
XM_039803905.1 mRNA upstream 515624 14289002 ~ 14312345 (-) False LOC120560975
TU82089 other downstream 151021 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 2550612 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 5337787 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 5852950 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6155834 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 1165597 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 1171118 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 1175381 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 1178124 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 1194301 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile