RNA id: XM_039804384.1


Basic Information

Item Value
RNA id XM_039804384.1
length 1546
RNA type mRNA
GC content 0.49
exon number 10
gene id wdr54
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16550250 ~ 16554512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAAGGATGACGTCTTACGTAGAAGTAGTGGCGTTGTCTCTATGGCTGCAGACGACGCGGAGGTAATCCTGTTGCTAACAAGAGCTAAAAAGACTGACACCAGATCACCTTCTGCCATTTCAACAAACCGCTCTGCCAAGAGAAGACCGCTCGATGTATCACAAAGAGAAGAGCATCCAGGTCAAAAACAGCGCCTCGGCGCTGTACAACAACCTCGGCGTGCTACGCATCGCCCCGCGGCATCTCACCTACTTCACGGTGGTCCATGCTAACGTGGTCAACATGGTCAGCGCGTCCTGGGACGGCCTCAACTATTCCCACCGCCAGCTGCAGTCCAAGGAGCCCAATGTCGCCACAAGCACATCGCTCATCATGCAGGCTGCGTTTTGTCCTCTGCCCTCTCGTGATCTGCTGGTGGTGACCTCTCAGAAAGGCATCCAGATGTATGAATCTGATGGCTCCATCATGGTGTACTGGCATGCACTCGATACTCCGGAAACACCTACAGCACAGGCCGTATTTTCTCGGGGGATATCAGCAGTGCGGGAGAGTTATATATGTGTGGgCGTTTCATCCGGTGCAATTCTAGTATTTGATGTTCCCAGTAAAGGCAGTAATATTACCCTGTCTGAGGTTCTGAAGGAGCACAAGGAGTCCATCACTGACATGGCCCCGGAGTGCTCTGGCAGCCAGGAGTGCATTGCTGATCTGGTCAGTGCAGACGATGGGGgcaacctgtgtgtgtggaagtCTGGGGAGGACTTTCAGCTGCTCAACAACATCCCCGGCTTTGATATAAGCTGCCCATCTGTCAAGTTGTGGAAAGGCACAGTGGTGGCAGGTTATGGCACAGGCCAGATTCGTCTCTATGAGGCAGTGACCGGCATCCTGCATGCTGAGATCAACGCCCACGCTCGCTGGATATACTCACTGGACATTGCTCCTTTTTCTGGGCTGCTTCTGTCTGCTGCTGAGGACTCTCTGGTCAGGGTGTGGCACCTGACAATGACCCCAGAGACCAACAGTGTTGAGGTTGTCCATTTGCACAATGAGTGTGTGACGGACACTCAAATATGTGGCGCCAAGTTCTGTGACGGCGATGGTTATGCTTTTGCAGTGACAGGCTATGACCTGAGTGAGATTATCCGTTACACACAGTCGTAGGACTTTGCTTTCATTGAAGCTGAGTATACTATTAATGTGAATTTGGTATGTTAGAGTGTTTCTGGAAAGATAACATGACCCAGGGGAAACAGAGTCAAAAGTGGCCGGGTCAGGGTCAGGTTGACACGGACGGGGGTATCTAACATAATCTGGATTCATGGCATTTCTGTCTCTAGGGCCTATATCTACAAAGGGTAGAAGGAGATTAGCATATAACAAAATAATGCAAAAGTAATCTGTTAAAGTTTCTATGAATTtttttaagtacaaatgtttaCACGTATGTGAATGTAGTTTTTGAAAGTTACAAAGATTCTATTATTCTTTCTGATATAATTATTGTTTCAAGCAGCTGTACCAATAAACATTTTTGTGAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83073 lncRNA upstream 36214 16512171 ~ 16514043 (+) True G62033
TU83002 lncRNA upstream 351386 16123200 ~ 16198871 (+) True G61975
TU83008 lncRNA upstream 407458 16134594 ~ 16142799 (+) True LOC120560394
XR_005639478.1 lncRNA upstream 407458 16140139 ~ 16142799 (+) False LOC120560394
TU82996 lncRNA upstream 499564 16048383 ~ 16050693 (+) True G61970
TU83128 lncRNA downstream 12970 16567482 ~ 16567714 (+) True G62082
TU83132 lncRNA downstream 55965 16610477 ~ 16620136 (+) True G62085
TU83194 lncRNA downstream 342076 16896588 ~ 16939963 (+) True LOC120560795
XR_005639513.1 lncRNA downstream 351081 16905593 ~ 16943176 (+) False LOC120560795
TU83185 lncRNA downstream 351093 16905605 ~ 16942729 (+) False LOC120560795
XM_039803788.1 mRNA upstream 10072 16537126 ~ 16540185 (+) True LOC120560896
XM_039803789.1 mRNA upstream 16082 16532916 ~ 16534175 (+) True LOC120560897
XM_039804459.1 mRNA upstream 45521 16495235 ~ 16504736 (+) True LOC120561368
XM_039804483.1 mRNA upstream 57622 16487394 ~ 16492635 (+) True LOC120561387
XM_039804482.1 mRNA upstream 66228 16477498 ~ 16484029 (+) True LOC120561386
XM_039802988.1 mRNA downstream 17816 16572328 ~ 16614766 (+) False rhobtb4
XM_039802991.1 mRNA downstream 17816 16572328 ~ 16614766 (+) False rhobtb4
XM_039802990.1 mRNA downstream 17820 16572332 ~ 16614766 (+) False rhobtb4
XM_039802989.1 mRNA downstream 17820 16572332 ~ 16614766 (+) False rhobtb4
XM_039802987.1 mRNA downstream 37413 16591925 ~ 16616256 (+) True rhobtb4
TU83072 other upstream 16108 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 74352 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 74360 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 773116 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 931113 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 1444174 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 1776193 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 1852875 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 1861616 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 2106645 18661157 ~ 18681161 (+) False acacb

Expression Profile