RNA id: XM_039804387.1



Basic Information


Item Value
RNA id XM_039804387.1
length 5438
RNA type mRNA
GC content 0.48
exon number 38
gene id spef2
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25626004 ~ 25646477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atattatgtctatgaaaggacctgtacaaatcaggttacgttgCCTTGCGTCAGCATGGACGCCCtcatgtgtatatatctatgcctcATGTTGACctgtcaccatggcaacagtgCACCTCTGGGATTTCCTCTGCTCCTGTCTATTTTTGAGCCGTTATTAGCGTGCTAAAGAGTCATACTATTACCTAGTAACATGTCCATTATTAAAATGGAAGTATATTGTTCGAGTTGAACTTTAAAGAAAGAAGATGTCTGATATATTGTGCAGGTGGCTGAACGAGGAGCTCCGGCTGTCAAAAGTTGTTGAACCAAAGACCTTTACCAAGGATTTCTCCAGTGGGTACCTTATTGGGGAGGTTCTGCATAAATATCAGTTGCAGAAGGACTTCAGTATGTTTATGAAGAAAGACACCTCCATCTCCAGACTGAATAATTTTACCCGCGTTGAGCCTACTCTCCAGTTACTGGGGATCTCTTTTGACATAAACACAGCCCAGGATCTGATGCaggaaaagcagggtgttgccACACGCCTGCTTTACCAACTCTACGTTTCACTTGAAAATAAGAAGAAAGCGGAAATCAGCAGCACATTGATGGAAATCATGCAGCCTGCAGCCAGTGCTGGCCTGCACAAAATAGAGCATGAGATCTACTCTGATCGACTGCATCAAGTTGTGAAACGTGATGCAGAGCTGAAACTACAGAAAATTTCTCAGCACTATGCGGAGAAATACCAGCAACTGAACGACAGGTTTGCGATGCCCCATCCCATCCAGCAAAGGAGACAACTCAGAGTCCAGGCTGAGAAGAGAATGAAGAATATTGAGAAGCTGCGAGCATGTCATCAGAAGCACAATGACATAATGTCTTGTAACCAGGCCACTACTTTCCAGGTGCCCAGGCCACCTCCGTACACTTCACAGCTCAACCTAAAGAagagacaacagcagcagcaacgtaGAGAACAGCAAGCACAGacggtccagactgaaatagcCAAGTTTGAGACAAGGAAGAAACTGGTTACTTATGGTTTTGCTCCTTCAAGTGGTCAGCCCTTCCCTGAAGATTTTCCCTTTGGTGGCAGCGGCCAGGGCTCTGTGGTCCCAGGAAGTGGAACTAAGCTGATATTACAATCCAATAGCAAGTACATACAGGATATCCGAAAGAGGCTGGAGGAGAATGCTGTTGCTCgcgagcagagagagaaaagacgaGACAGATTCCTGGTGGAGCAGCTCAAGGCCCATGAAGCTCAAGAGGAGGCACGGCGAGAGGAGCAGCTGGTGAAGCGTCTGACACGTCAgactcagcaggagcagaaattGGCAACTCAGCTCCTCCAGATACGCGTGCAGAAAGATGTGATCCGGAAGAACCGCCAGTTCAGAGAGCAGCAGTACCAACAGCGGAGAGAGAGGGACTTCCAGGAAGCTCTGGAGAGGGAGGCGGCTTTGGCTCAGCAGGCTAAGTTGGACCTTGCCGAAGAGATCAGAAAGGAGCATGAATTCTGTAACAGGATTGCTGCTGAGCGAGCTCAGATCAGATACAAGAAGCACTTTAAGAGCTGCAAGGACATTTTGGAGCAGATTGTGGACTTGGCCACCAAGGTTGGAGAATATCGACTGCTCACTGGGAATCTGATTCCAGAGAAGCCGATGAGAGAGTGGAAGGAATTGCTGTTCAGTGGTCTGCCTCTCTATGAGCCGATAAAGTGCCAGCAGCCAGGGTTTGAGTTCTCTACCCCACTGGACCCTGTAGAGCTTAAGAAGCAGGAGATATTAAAAAACCAGGACTATGATGAATATACTAACATGGTAGGTGAGTGGGCATGGCCAGAGGAAGCAGGGGAGATAACATTAACTCTGGCCAACAACAACATTCTTGGACATGTTGTCCTGCGACTGAGGAACATTGTTCATCCACCCATCATGGAAATCTCCTCACCTTCATTTCCTCACTTTACCATCAAGGCCTGTGTCCTGGGCAAGTTTTGCTCTGGCAAAACCACCTGCCTGGCCAAGATCGCTAAAGCCCATGGCATCTATGTCTTATCAGCTGACACACTAATTGAGGAGGCTCTGAATGCTTACCAGAATGGAGAGCATGTACAGGTCACAGAGCCGCAGGAAAAGAATGAAAATGAGCAACTGCTCACATTTTCCACATCACTGAATCCTGATATTGACACTCAAGATGAAAGTAGAGACAGCAATGTAAAATTGTCTACCCGGGCCATGCAGGGAGCAGCTGCAGAAGAAGAGCTAAGGAAAGGCAACGCCATCCCTAATGAGCTATTAGTTGACATCATAGTAGAGGCTATCAGGCAGGTTCCAGCTCAGTCAGGCTGGATCCTGGATGGCTTTCCATTTGACATCACCCAGGCTTACCTGCTGGAGAAAGCCCTGGGTGGGTCTGTAGATGTAGGGAATGGCGTTGTAAGCAGCAGGACAAACCTAGCTGCTGATCCTAATCCACCCAaacctcccccacccccaactCCTGCATTGGACCTGGCTCTGCTGCTGGATATCGCTGATGAGTGTGTGATCAGTCGTCCATTCAGTCAGATGGAAACAGATAAGTCTGCTGCTGCTACAACCTCCCATCCCAAAGACAAGAACTTGTATCTGGCACAGATTCCACACAGGATCACAGCTTTTCAGGACACCTGGCCAAAACTAGAGAAATGGTTTGGTGAAAAGCAAAACATTTTGGTCCGTATTGATGCAGATGTAGATAAGGAAGAGCTTTACAAAAGGGTGGAGTCTGTGCTGCAGCAAGTTATGATGCAAACACAGGAAGATGTAGTGTTTAACAGTGGGGAAGCTCCAGACTCCTCCTTTTCAGCTACACCTCCACCATTAGACCAACCTCCGGCCCTCGCAGGTGAAGCCCCTGGCCCCACAGAGTCCAATTCCCTCCTTAACgaggaaaaagcccaaagtgtGAAGTCACTTTCCAAATCCAACACAAACTCCCCCCGAGGGCACTCTAGGAAGGTGTCAACTTCCTCATTGACCAACGAGAACTCTCAGGGAGTCCCCAAGAACCCACCTGAATCTGCCACTTCCTGCTCAGATTCATCCAGCTGGGTCCATGTGGACCAACCTCTTCCTCCGGAGATCACAGAGTACCTGTGCTCCCACTGGGACACAGTGTGTGATTCATATGTGAACAATGTAAAGACAGTGATGCAGCAGCTGCGCTCACAACGCACTATTCTTAACCATCACCTATTCAACATCAGAGAGGAGTACAAGCATTTCCTGGGGCGTCCAGACTTGAAGCAGGAGTTAGTGTCTCATTGGCAGAAGGACTTCAACAGCATACCTGATGATATGAGAGAAGATGAGGATACCAAAGCAGAGCTACATCTGAGACTTGATGAACTACGCGAACGTTTGTGGGACATAAGTGACAAACGTAAGGAGGAGGACGAGCAAGAGAGGGCTGCCCTCATGGGTAACGGCTGGTTGGAGAATCTCGTCAACTATCACTCTGTACTTATGCAGGTGGAGTTGGATCGTTTCCAGGACACACTCTATATTCTCTGGGTCTACTATATGAGCATGTACAAACAAGTTCTGCCTGAGCTACCCCCCAAGTTGGATTGTATCCCCCTACTGGACACCCCAGTAATTAAGGATCAGAACGAGAGTACTGAGCCAGCGGCCACAAGTGTGTGTAGTCAGATGGATGACGGCGAGgacaagaagaaaacaaaactACGTCCTGACTCCAAGACAAAAAGCCCCAATCAGACAGAAACTGTTAAGCAACCCCATGAGAAACTGATCTACGACTACGAGGAGGCACTCGCGGCCATCAGCAAATTGGTGTCAGCAGAAGCCTACCAGGGAGAGACAATAGAGCAGAAGGAGAGACTGCAAGAGAAGGAAAAAGGGAAGCATAATCAAGAAGTCAGAAACAAAATACATAAAGAATATGCAGCCGCACTGGATCACGAGGaGAATACAGCAAAGGCGCGCATTGCGCTGGTGAAAGGTCATGGTCTGGTGATGGTGCACTCCCTGCAAAGCAGAGCAGAAGAGACATTAAGCAGCATGGAGAAGTGGTTAGAAGCACACTATCTTGCAGACATGAAGAGtATTGACCAACTATCAGTAGTGGTTCGCCACCACATAGAGGCTGGTGCTAAGTTGCAGAATGAGCTGGTGTTGGAATGTACTGACTTCTACCTGAATGGAGACTGCCACATGGTGGCTAGCCTGGCTCCCCGTCCCCGCCCACCTCCTCTGGAGAAACCCACACGGTCCACTCCAACCATCACTCAGCTAGAGTCACTACACCAGCAGCTATGCATCGTTGCTCCTTCAGGCCTTATGTCCAGTTCTGAGTTCTCCAGTTTACTTAGGAATATCATCTCTGTCAACATGGGCAGAAACACCTTGCCTGAGCTCTGGATTAACAAGAATGAAACACAGTTGATGGAGGTTATATCTCTGTTTATGGACAACTATGAGCTGATAGACTGGCGTCGGTTTCTGCTCAGTGCTGCCCTGCCTTGGCCGTTTCCCTCCTTATCACAGCTGCTGGCTGTGCTGCAACATTTCAAGGCAGCAGATACTGGCGACACAGGCTATATAAACGAGGAACAGTACCTACAgACAGAGTTGTGGTTTTCCAGTGAGAGTGTCCAGCCTGTCCCAGAGGACCCCTCTGAGCCTCTACCTTATAACCGTCTGGCTAACCTACGCAAGTTCTTTTTCCAGTTGTTTGCGGACCACTCCTTCTCCCCCCCTCGACTGGACTATGTGTCCATGCTGCAGTACTTTGCAGCCGACCCTCACCCCAGACAGGGCTTCATCAGAGCACTTAGTGTAGGACTGGGGCGACATCTCAAACACTCCTCACCGGGCCAGCTTGTCAAGTCTATGCCCAGTATAGAAGAGGCTACAGAGCTCAGCTCCTCAGAACTCGATGGAGACTACAAGGAAGAAGAGAATCCGTGGGCATCAAGCAGTTCATTGGGGGAGGAGGTAGTGTCCATCCCTGCTCTCCTTGCTGTCATCTGCCACAATGTCGCCAAGATAAAAGACGACAAGCCCCTTCCTCCAGGCTGCCTGAGTCAGGAGGAGCATACTGAGGAACTGGTGCATATCTTCAGAGAGCTGGGCTACAAGCCAGAGGACTGTGTCCCCTTCTCCCATTTCTCTCAGCATCCTTTTATCCAGGGCCTGATGGAAACCTTAACACACTACCAGCTTGTAAACATTCATAGAGTGCTAAAGGCCCATCAGGATGAAGGAGAGGCTAACAGCTTGACAGTTTCCTAAAGGATACAGTAAATATACATACTTAGGAAATGCAAAATATGTTGCTTTTGCTATTTTGAAGTACTACCTTTGAAATGTTTGCTGAAATGCATTGCTTACTTCAgtatttaataaatacatttgcaaCCACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86363 lncRNA upstream 70224 25552939 ~ 25555781 (+) True G64495
XR_005639499.1 lncRNA upstream 73741 25548023 ~ 25552264 (+) True LOC120560635
TU86357 lncRNA upstream 74508 25548151 ~ 25551497 (+) False LOC120560635
TU86352 lncRNA upstream 119437 25506164 ~ 25506568 (+) True G64489
TU86313 lncRNA upstream 323085 25259716 ~ 25302920 (+) True G64450
TU86472 lncRNA downstream 16550 25663027 ~ 25663385 (+) True G64578
TU86493 lncRNA downstream 50586 25697063 ~ 25699784 (+) True G64592
XR_005639536.1 lncRNA downstream 67433 25713910 ~ 25747889 (+) True LOC120560927
TU86515 lncRNA downstream 141980 25788457 ~ 25795441 (+) True G64607
XR_005639405.1 lncRNA downstream 192659 25839136 ~ 25843093 (+) True LOC120560032
XM_039803262.1 mRNA upstream 3954 25601156 ~ 25622051 (+) True LOC120560598
XM_039804190.1 mRNA upstream 52898 25567704 ~ 25573107 (+) True cdo1
XM_039804191.1 mRNA upstream 52898 25567705 ~ 25573107 (+) False cdo1
XM_039804192.1 mRNA upstream 52898 25568565 ~ 25573107 (+) False cdo1
XM_039803027.1 mRNA upstream 180865 25336024 ~ 25445140 (+) False sema6a
XM_039803611.1 mRNA downstream 638 25647115 ~ 25653156 (+) True LOC120560771
XM_039803612.1 mRNA downstream 9208 25655685 ~ 25659461 (+) True LOC120560772
XM_039804178.1 mRNA downstream 38487 25684964 ~ 25696576 (+) True LOC120561182
XM_039802203.1 mRNA downstream 110611 25757088 ~ 25762906 (+) True LOC120560092
XM_039802204.1 mRNA downstream 110611 25757088 ~ 25762906 (+) False LOC120560092
XR_005639471.1 other upstream 791374 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 791385 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1932714 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2695800 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 4027206 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 38495 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 267905 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 766392 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 847858 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 847858 26494335 ~ 26496328 (+) False c6h22orf39