RNA id: XM_039804404.1


Basic Information

Item Value
RNA id XM_039804404.1
length 3655
RNA type mRNA
GC content 0.44
exon number 12
gene id zgc:63587
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26415890 ~ 26447513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCGGGGGCGGACTCACAGAGACGGTTTCCGGGTTTCCCTTCCTGGGCTGGGACAGCGGCAAGAGGCAGAAACTCCAGTTGATTAACAATAATTCAAAGTTACGTTCAGGCTCGTCAGCCATCCAGTAAACCGCAGCGATGTCTCAGtctggagagaaagggaagTTCCCAGATGCAGCAGGTTATGTAGGGTTTGCCAACCTCCCAAACCAAGTGCACCGAAAATCTGTGAAAAAAGGGTTTGAATTTACCCTTATGGTTGTTGGGGAGTCTGGCTTGGGCAAATCGACACTTATAAACAGCCTGTTTCTCACTGATCTCTACCCTGAACGCTACATCCCTGGTGCCGCAGAGAAGATTGAGAGGACGGTGCAGATTGAGGCATCAACTGTGGAGATCGAGGAGAGAGGAGTAAAGCTTCGCCTCACCGTGGTTGACACCCCTGGATACGGCGATGCCATCAATAGCCAGGACTGCTTCAAGACCATCATCCAGTACATTGACAATCAGTTTGAGCGATACCTCCATGATGAGAGCGGGCTGAACCGAAGACACATAGTGGACAACAGGGTGCACTGCTGCTTCTACTTCATATCTCCATTTGGACATGGTCTAAAGCCTCTGGATGTGGAGTTCATGAAGGCCATCCACAGCAAAGTCAACATAGTCCCAGTCATTGCCAAGGCTGACACACTGACACTGAGGGAGAGGGATCGCCTGAAGAGGAGGATCCTGGATGAGATCGCAGAGCATGGGATCAGAATTTATCAGCTACCTGACGCCGACTCTGACGAGGATGAGGAGTTCAAGGAGCAGACCAGAGTCCTGAAGGCGAGCATTCCCTTTGCTGTGATTGGTTCCAACCAGCTGATTGAGGTGAAGGGGAAGAAGATCCGTGGTCGTCTCTACCCCTGGGGAGTTGTTGAAGTGGAGAATCCTGAGCACAATGACTTCCTCAAACTACGCACCATGCTTGTGACCCACATGCAAGACCTCCAGGAGGTAACTCAGGATCTGCATTATGAGAACTTCCGTTCAGAGAGGCTGAAGAGAGTGGGCAGGGATGCGGATGAGGATGTGATGGACAAGGACCAGATCCTGCTACAGAAAGAGGCCGAGCTGAGACGCATGCAGCAGATGATCGCTCAGATGCAGGCACAGATGAAGATTAAATCAGATGAATGAAAGCATCAGAGCAAAAGGGAAACACGGTGATACCAAccccctcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatattgtgACGTCATGAGAGGCTTCACAGCTGTCAGCGGGGTGGCTCAAGTAGTGCAAGGAGACGAGGTTCAAATAATAACAAGGAATTTATTAAAGTTCTTGGAAGTCAATGAAAACATAATAGAATGCAGACATCTTGTTGCTCTTTAAGGGCCAACACTTCAGGGATGTCTCTTCGGCCTCTTGAAATCATAATTCTCTCCCTCAGGAAAATAAACAGTTTTTCTCAGCCTTATGGTAGTCCAGGCTGCAGCTAGTGGCCAAGCCAGCAGTAAGTCACCACAGGTGAACACTTCCAACAGTGAGTCTCCTCCACAGACAAGTCTCTCCAACTCTTCATACTCCTCATGGCAACAGCAGCACAGCGCTCTCGTCCTCCTGGGAGCCCAGCTTGGAGACCATGTCtccccaccacacacagaccTCTCTAAGTGTGTGTCCATCCCTTAAAAACCCTTCAGCTCATCAGCTCCTGATTTGTCACAgctgtgtgggaacattggcCACAGAGGGGTGGACTTCCCGATTATACCAGCGGATGGAGCCACAGCTGTCTGTGCTTGCAGACATCTCAGGGGGATGTAACGTCCGTCCAGGACACAGCCTCTCGTGACgtcacaatatatatacacacacacacgcacacgcacacatacctGGTCCTCCTCTGAATCAATCACTGCCTGCTGCCATGCTGCAGGTCCACCAGGAGTCAAGGTATCCAGGATCAAATCATCTTTATCTGCATaccacttcttcttcttccctccaaacatccatccatcagcTGTTCAGGAGCTTCTTGAACATCTTGTCAAACTCCAGTTACAATCCACATATAGGCCCGCTGattatcttatttttttgtataagtTACAAGTTTGCCGAGTTggactgggaaaaaaaaaagtgaacacAACGTTTTGATACTGGATGACTATCATAGACATATCCATTATTTAGTCTTTGATCTTAATTATGACTCCACAGAGCTTCCAGTGATAATGGTACTAAGATGTTTTGCCATCACACTATCTTATTTACAGAAATATATGTATGAATTATGCATTTTGCTCAAGTCCAAGCTTCAGACGGCACCATTTTCCATTTATATTGCTATCAGCTTCTGACCGGttttgaacatattttaatttaacgtgTTTTCTGTTAGCTTATGAGCCCATCACCTTTACCTCTGGATGCTGGAATCTTCACTGCGTTAGTCTAATACTGCAATAAATATTATCACAGTTAAATGCAAGTGTGATTGTGAATGATGTAAACTGTCCATGCAGAGAACGAAGAATGCTTTGTACCTAATTGTGCTAAACTAGAAACCTTATTTTGTAGCCAACACTACAAACTTAATTCTAGGCATTTTATTAGGCCTTTAAGCTGAAAAGCTACTATGCAAGTAGTCAAACTAATACTACTTTGTTATAAAGAGACACAACCAGCCTTAGGATCATGTTATAGTTGAATGAAAGTGCCATCTTGttaatattttctgtatttatcaTCAGGAGCTGCATGATCTCAATGTCAGTGCCATAGTACAACTACAGACTGAAAACTAATCGCACTATTCAGTCCAGTCACTTAATGTGTCCGTATTTGTTTCAGTGATgtcatttaaagctacagttggCAACtttgataaaaaatattttaatatttgctTACACAAATCAGATAATCTGTGGAAAAAAATCCACctccctctgcctcctcctggtgTTCCTAATGGCATTAGGAAAACAACCAAACTTTCTCATGTTTCAGCTAAACTGCACACTAAAATATCTTTCTGAAAGAATTTGAGGCAAGAAATAGGCAATGCACTAACAGAATATTGATTCATATTTGATGAGTTTGACAGTTTGACTGCAGTTCACGAGCAGTCATTGACACTGCGTAGAGAttcctctgctctgattggtagTTAATCTTGGAAACTTAGAAAGGCAGAGGaacatgatttttttcacagattGTCTGCGTATGTGCTACCgttttcagcaaatatgacaaaaagttgttttaaaaaaaagttacctaCTGAACCTTTAAAACTGTCTTAACTACATGTGCAGCCTTTTATCATTCTGTATTTGGGTCATTTaggaataatatatatttaactgttATAAGCGTAAGTGACCTCCACCCTTCTGTTTAGCAGTGCTATCTAACTGTGCTGTCATTGATGTGTTGTTGgcaatattttagtttttctatATTTTGCTCTTGTATGCACATCTGTCTTTTGAACTTAAGACACacgtttttattatttcttaacCATATGACAGTAAAGACTTGTTTTAAGGcgtaaa

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86725 lncRNA upstream 32057 26371634 ~ 26383843 (+) False nsd3
TU86705 lncRNA upstream 93944 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 486742 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 487308 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 493512 25922163 ~ 25922388 (+) True G64663
TU86797 lncRNA downstream 46822 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 64952 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 84239 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 87499 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 87595 26535108 ~ 26537695 (+) True G64838
XM_039802095.1 mRNA upstream 13239 26395798 ~ 26402661 (+) True cdc45
XM_039803887.1 mRNA upstream 21499 26384409 ~ 26394401 (+) True plpp5
XM_039803585.1 mRNA upstream 34406 26359120 ~ 26381494 (+) False nsd3
XM_039804406.1 mRNA downstream 12113 26459626 ~ 26470702 (+) True sept5a
XM_039804407.1 mRNA downstream 25261 26472774 ~ 26475318 (+) True gp1bb
XM_039804408.1 mRNA downstream 28675 26476188 ~ 26488401 (+) True dhx37
XM_039804409.1 mRNA downstream 41808 26489321 ~ 26493564 (+) True ufd1l
XM_039804411.1 mRNA downstream 46771 26494284 ~ 26496308 (+) False c6h22orf39
TU86770 other upstream 1303 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 500371 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 719330 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1581269 24823718 ~ 24834631 (+) False cdc14b
TU86790 other downstream 46822 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 46822 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 46822 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 166724 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 197507 26645020 ~ 26657969 (+) False si:dkey-178e17.1

Expression Profile