RNA id: XM_039804409.1


Basic Information

Item Value
RNA id XM_039804409.1
length 1353
RNA type mRNA
GC content 0.46
exon number 12
gene id ufd1l
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26489321 ~ 26493564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTCATTTCCTACCGTCACCTCGTACACTTCCGGAAGAAGCGGAAGACAACAGTGAAAAGTCACAGCTTATATGCTCGCTATATGCAACGTTTTCAAATAGcaaaacagacattttgattTGAGTCTTTTGACAACAAAAGAGCTAAACTGTCGCCATGTTTTCCTTCCACGTATTTGACCACCCGATGTCCCGGGGGTTTCAGAACCGCTTCTCCACTCAGTACCGCTGCTATTCGGTGTCCATGCTGGCAGGTCCCAACGACCGCTCCGACGTGGAGAAAGGAGGCAAAATAATAATGCCACCTTCAGCTCTCGACCAGCTCAGCAGGCTTAACATCACCTATCCAATGCTGTTCAAGTTGACCAACAAGAACTCAGACAGAATGACCCACTGTGGTGTTCTGGAGTTTGTGGCAGACGAGGGAATCTGCTACCTGCCGCACTGGATGATGCAGAATCTCCTGCTGGAGGAAGGTGGCCTGGTCCAAGTGGAAAGCGTTAACCTTATGGTGGCCACCTACTCGAAGTTCCAGCCACAGAGCCCCGACTTCCTAGACATTACAAACCCCAAGGCAGTACTGGAGAATGCATTGAGAAACTTTGCCTGCTTGACAACTGGTGATGTCGTAGCTATCAACTACAATGAAAAGATATATGAGCTGCGAGTAATGGAGACCAAGCCAGATAAAGCAGTGTCCATCATCGAGtgtgatatgaatGTGGATTTTGATGCTCCTTTGGGTTACAAAGAGCCTGAACGACGACCTCAGCACCAGGAAGAACCAACAGAGGAAGAAGCAGATCCCCCCAGTTACGAAGACATGGACCTGGGATTCAGAGCTTTCACTGGCTCTGGCAATCGTTTGGATGGTAAAACAAAAGGGATTGAGCCCAGCCCTGCCCCTCTTGGCCCAAGTGACATCAAAAGAGGTATTCCCAACTATGAATTCAAAGTTGGCAGGATCACCTTCATCAGAAACTCGAGGCCTCTGCCCAGGAAAACTTTAGATGACGATGATGCAATGAACAGATTCATCGCTTTCTCTGGAGAAGGACAGTCACTACGCAAGAAGGGCAGAAAGCCTTGAAGGATTTCAAGTGCGGAGACTGGCTAGTGTACACAGACTCACCGTATCTATTGTCACATTCAacagcaaagtaaaaaaaactggcCTTCAGATGCATTGGGATTTTGTCTCGCTGTCTCTTTGAAATAGGATTTTTGCTGTTGAGTTGGGATTATATGTAATTGAAACTCTGACAGTAATATCTTGATCAGCTGAAGCTGAGCTCCATAAAATGCTGTCTGTAGTTTGTgggataaataaaaataaataatatcacCACACCA

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
K14016 UFD1; ubiquitin fusion degradation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86725 lncRNA upstream 105478 26371634 ~ 26383843 (+) False nsd3
TU86705 lncRNA upstream 167365 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 560163 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 560729 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 566933 25922163 ~ 25922388 (+) True G64663
TU86797 lncRNA downstream 771 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 18901 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 38188 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 41448 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 41544 26535108 ~ 26537695 (+) True G64838
XM_039804408.1 mRNA upstream 920 26476188 ~ 26488401 (+) True dhx37
XM_039804407.1 mRNA upstream 14003 26472774 ~ 26475318 (+) True gp1bb
XM_039804406.1 mRNA upstream 18619 26459626 ~ 26470702 (+) True sept5a
XM_039804403.1 mRNA upstream 41808 26415890 ~ 26447513 (+) True zgc:63587
XM_039804404.1 mRNA upstream 41808 26415900 ~ 26447513 (+) False zgc:63587
XM_039804411.1 mRNA downstream 720 26494284 ~ 26496308 (+) False c6h22orf39
XM_039804369.1 mRNA downstream 6009 26499573 ~ 26505004 (+) True acaa2
XM_039804313.1 mRNA downstream 13081 26506645 ~ 26511245 (+) True rpl6
XM_039804321.1 mRNA downstream 49462 26543026 ~ 26553731 (+) True vdac3
XM_039804322.1 mRNA downstream 49462 26543026 ~ 26553731 (+) False vdac3
TU86770 other upstream 74724 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 573792 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 792751 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1654690 24823718 ~ 24834631 (+) False cdc14b
TU86790 other downstream 771 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 771 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 771 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 120673 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 151456 26645020 ~ 26657969 (+) False si:dkey-178e17.1

Expression Profile