RNA id: XM_039804419.1


Basic Information

Item Value
RNA id XM_039804419.1
length 3130
RNA type mRNA
GC content 0.53
exon number 17
gene id rabl6b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3214589 ~ 3234118 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACGCTTGACGTTGCTCCGTGACGCTGGCACTGTGCTGTAGCTGCCTGCCGTAGACTGGGAAGGTAGTTTCTCTCTTTGCGAAGGAATGTCGCTGCTGCTGCCGTGTCTCTGTTGGGATGGAGGACTGACAGACGCTTTGGGACAAACATGTCGGGACTGCAGTCGCTTATCTTCTTAAATAACCATGATGCTCAAAACAACACAGTAGGTACCTCCACCTGTGACTGGCAGCCAAGAACATCTAGTCAGATTTAAGAGTACCGTACCGCTGCTGAATCAATTCAGAATCAAAATTTATTAATTTGGCATTATATTTGCTTCCAAGTATGGACCCTTAACTTCCCCATCCATCAGGACACACAGTTACACTTTTCCTTCAGTTGTTGTGTGACAAATTGTCAGGGGAGTTCCACTGTACTACCACCTGTTACTTTACAAGCTGGTGAAGCCTCGTCAAGATGTTTTCAGCGCTTAAGAAGCTGGTGGGGTCCGAGCCAGGGCAGCTCAGGGACAAGAACATTCCGGCTGGCTTGCAGTCGATGAACCAAAGTTTGCAGAGACGCTTCGCCAAAGGGGTCCAGTATAATATGAAAATAGTCATCCGGGGAGATAGAAACACTGGGAAGAGTACTTTATGGCATCGACTGCAGGGCAAGAAGTTTGTGGAGGAGTATCTACCCACTCAGGAGATCCAAGCCACAAGTATCCATTGGAACTACAAAACTACTGATGATGTGGTGAAGGTAGAGGTGTGGGACGTGGTAGACAAAGGCCAAAAATATCCTCTTCCTGAAGGTGTAGgcAAAGGCAAAAGACGCGGAGAGAATTTGAAACTGGAGAATGAGCCCCAAGAGTCCGATGAGGTGGCCCTGGATGCAGAGTTTCTGGACGTGTACAAGAACTGTAATGGAGTCATCATGATGTTTGACATTACCAAGCAGTGGACTTTTAGCTACATCCTGAGGGAACTGCCCAAGGTACCCACCCATGTgccggtgtgtgtgttggggaacCACAGGGACATGGGCGAGCATCGCGTCATCCTCCCTGACGATATAAGAGACCTGATTGCTGGACTGAACAGACCAATGGGAGCTTCTTACATCCACTATGCCGAGTCCTCAATGAAGAATGGCTTTGGCTTGAAATATCTGCACAGGTTTTTCAACATCCCCTTCCTGCAGCTACAGaggGAGACCCTCCTGAGGCAGCTGGAGACAAACCAGCTGGACATGGACGCCACCCTGGAGGAGCTCTCTGTGCAGCAGGAGACTGAAGATCAGAACTATGAGATTTTCCTGGAGAACCTTGAGTCTCGCAGTAAGGGCTATGGCTCTCCTGGTCCAGCTAACGGTCAGAGTCCCTCCTCTGGCTCCCAGTCCCCCATCGTCCCTCCCAGTGGGGCCTCCACAGGCAGCTCCAGCCCCAGCACCCCTCAGCCCCCAGTGCCCTCCCAGATGCTCCCACAGTCACCGTCTGTGTCCGCCTCctcccctccacctccacctccgcCGGCACCGGCTAGCGGGGCAGCTTCACCCGCTGTTGAGTCGAAGCCATCGGCCCAGTCGCCCGAACACGTACAGGCCTCGGCTGCATCTGGAGCGCTGGGCCCCCAGAAACGTGGCTTCATGTCTCGCTGGTTCGGTTCAACTCCTGCCTCGGAGGCTCCTGCTTCTGCACCAGACGAGCCGCCTGCATCAGTGTGTCCTGCTAAGGTTCAGAGTGTGGATGATTTTATGCCCGATGAGAGACTGGATAAAAGCTTCCTGGAGGACAGCCTGCCCCCCCGGACCAAGCCGCCCCAGCGTGCTGCGGCTATGGACAGCGACAGTGATGGGGAGAGCCGAGGAAACCCCATGGTGTCTGGTTTCCAGGACGAGCTGGATCCTGATGACACGGAGCCCGGTCTCCCCCAGCCCAGGACCCTACCCCTCAGTAAAGACATCACTCTGACCAGTGATGAGGACGAGGTGGCCCCAGCAGCCCCCGCTATCACACAGGACCAAGACCTGGACAGTGAGCACGAGCTCAAAGCGCCTGTGATCCACATCACCAAACCAAAGGTGGCCCCTAAAGGCCCGAGCATCTCCCTGACTTTGACTCCAGCTGCAGAGCAGCCGCCCCAACACCCGGCCAGGAAGAAGGGAGGAGCAGCCAGAGCCGAGGACTCAGACTCCGAGCCCGAGGCCCCGGTGGCCCAGCAGATGCTCTCCTTTGTCATGGATGACCCCGACTTTGAGTCTGAAGCATCAGACACACCAAAAATAACAAAGGAGACATTTCCAGTCCGAGACGAGCTTCTGTCCGACCTCTCTGACGACGACCTGCAGTTAGCCAATGTGGCAGAACCTCTGAAGCCCACTGTGATCTCCTTCAAACCCAAGGACGATACCGACCTGTTTGGCCTGGGCATCAAGGAAGAGGCTCCCGCAGCCAAGGACAGCAGCGAGGAGCAGGAAGGGAAAGAAAGCAAACACTCCtccaaagagaagaagaaaaagaagaagaaaagcaaagagGAGGATGAAAAGAACaagaagaaacacaaacacaagaaaaaagaaaaagacgaAGACGCAGCAGGAGacgagaaaaagaagaagaaatcccGGACCAAGAAAACGGAGGTGGACGAGTTGGAGGACTTTCTGGGCGGAGGAGCAGGCTCGATCAAAAGAGATGACGGCGATTATGAAGAACTATAAGCGCTCCTGTTCCATCAGGAACGGAAGCATAAAGCATCTCCAAGCCATACGCACTCCCTCTGGTACCTGTCTGTTCCTTCTGAGTGACTCCACATCTGCACTACTGCTGTCACTTCCATTCCAGCCAATAGGAAACAGCCAGGAGACCCCCGGGAACTGTAGGGTCGTGACATTAAAATCTGATGATTGGCTCTCTGTACTTTGACATGACTGAATAAGTTGGCTCCATATTTCCTTTGATTTGATATACCAGTGACCCACTCTGTAAATAGGGTTCCCATTGTGTCTGGTTGGTGTACTAATGGAGAGCATGCTTACAGTGACCACTGACAGtcttctgtctttttctttcattctaCTTCAGTGGCCAACGGCACATTTAGTCTTGTGTCTCTACATATAAACCGTGAACAATCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79049 lncRNA upstream 48749 3165613 ~ 3165841 (+) True G58819
TU79047 lncRNA upstream 58295 3156062 ~ 3156295 (+) True G58817
TU79007 lncRNA upstream 140358 3073663 ~ 3074232 (+) True G58793
TU78994 lncRNA upstream 165561 3048755 ~ 3049029 (+) True G58780
TU78991 lncRNA upstream 172147 3042139 ~ 3042443 (+) True G58778
TU79148 lncRNA downstream 163035 3397153 ~ 3397790 (+) True G58892
TU79149 lncRNA downstream 180986 3415104 ~ 3415416 (+) True G58893
TU79154 lncRNA downstream 255673 3489791 ~ 3490092 (+) True G58898
TU79155 lncRNA downstream 260986 3495104 ~ 3495899 (+) True G58899
TU79156 lncRNA downstream 270333 3504451 ~ 3504749 (+) True G58900
XM_039804432.1 mRNA upstream 221552 2938029 ~ 2993038 (+) False nsmfb
XM_039804429.1 mRNA upstream 221552 2938029 ~ 2993038 (+) True nsmfb
XM_039804430.1 mRNA upstream 221552 2938029 ~ 2993038 (+) False nsmfb
XM_039804431.1 mRNA upstream 221552 2938029 ~ 2993038 (+) False nsmfb
XM_039804435.1 mRNA upstream 300764 2897540 ~ 2913826 (+) True LOC120561351
XM_039804444.1 mRNA downstream 6011 3240129 ~ 3245982 (+) True imp4
XM_039804415.1 mRNA downstream 13336 3247454 ~ 3270107 (+) True zfr
XM_039804416.1 mRNA downstream 13336 3247454 ~ 3270107 (+) False zfr
XM_039804417.1 mRNA downstream 13336 3247454 ~ 3265643 (+) False zfr
XM_039804454.1 mRNA downstream 124025 3358143 ~ 3371500 (+) True hmgcra
TU78941 other upstream 334846 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3002220 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 883161 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1190023 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1198053 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1198550 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 1295992 4530110 ~ 4531165 (+) False mrpl41

Expression Profile