RNA id: XM_039804437.1


Basic Information

Item Value
RNA id XM_039804437.1
length 2150
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120561352
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3311067 ~ 3315203 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTTCACGCGTGGGGTAAGTTCTCTGCTCCTCTGGTCGGCATTTGGTTAAGGAAGCGTTACCGGATGTACACAGAGTATTTCAGCTCGTCATCTTTCAGACGCCTGGTGCGTAGTGAGCAAGTACTGATGTGGAAGTGTGGGAGAAGCGTGCATGGCTCGAGAGACGCTCAAAGACACCTTTAGAGAGCAAGAATGAAAATAAGATGTTCCCACTACACACATAGATTGAGACACAGGTGCTTcctgttttctctgtctctgctggCGGTCTGTCTGCTCAAGCTGGTCTACATCAAAGTGACGGTGAGGGATAGCGTCTACATCCAGCCCTATGGAATCACTGTCAGCTTCTCCAGCACCCACAACCACAGGTATGACATCAACTGCACGGCAATCTACGAGCTGGACCCTGTGGAGATCGGCAAAGCTCTCCAGATCAAACGGAAAGCCATTGTTGACGTGGACGATGACAGCACCGTGAGTCTGACCTCGGACTGCCAAACCTTTCTCAAAGCACGGGGTTACAATGAGGCTCCGGTGTCTGCTGCAGAGCGCAGCTTCCCATTGGCTTACTCCCTGGTGGTGCATAAGAACGCCCCCATGGTGGAGCGAATCCTTCACGCTATCTATGCACCGCACAACATCTACTGCATCCACTATGACCAGAAGTCCTCTCCAGCATTCATAAAGGCCATCACCAACCTGGCTCAGTGCACTCCAAATGTGTTCATCGCCTCTAAACTGGAGTCTGTGGAATATGCCCACATCAGCAGGCTGAATGCCGACCTGAACTGCCTCTCTGACCTgctgaggtcagaggtcaactgGAAGTATGTCATCAACCTGTGTGGCCAGGACTTTCCTCTCAAGTCCAACTTTGAGCTGATGCTGGAGCTGAAGCAGCTGAACGGCAGCAACATGCTGGAGTCCAGCCGGCCCAGCGGACTCAAGAAGCAGCGCTTCAGCTTCCAGCACCAGCTGAAGAACGTGCCTTTTGAGTACCGGCGTATACCGGTCAAAACCACGGTGCTCAAAGATGCTCCTCCTCACGACATCGAGATGTTCATCGGCAGCGCTTACTTTGTCCTGTCACGGGATTTTGTAAATTACATCAGCAGCAGCCAGGTGGCAAAGGACTTCCTGGCATGGTCAGCTGACACATACTCACCAGATGAACACTTCTGGGCCACCCTGGTCAGGGTCCCCGGGGTCCCGGGGCACATTCCCAGGTCCGAGGCTGACGTTACGGATCTGAGGAGCAAAACACGACTAGTCAAGTGGAACTATTTAGAAGGAAATCTTTACCCAGCATGCACAGGTACACACATGCGCAGCGTTTGCATCTACGGAGCGGCTGAACTTCGCTGGCTCCTCAACTATGGCCACTGGTTTGCTAACAAATTTGACCCCAAAGTGGACCCGATCCTGATTAAGTGTTTAGAGGAGAAGCTGATGGAAAAACGTCAAAACGTGCAAACATGACACTGATGCGAACAGGAAACGTGACGACGAGCGCCAGTGTTTATTCTGTTGTTAGGCAAAGGTGCAAAATGACATCAGAGTTCACCGACTCAGTCATTGGACCCAAGCACAGCTCTGAGATGCAGGCACTTGGCTTGAGTATATTTTCGTTTTGTTAATTAGAAAACATTGAACTTGTTAGGATACAACATGTGTCTGATGGCTTCtaattactttgcagattacGATTTCTCCAGCAAACACAATGAGGTCATAAAATGTCTGAACCACCTGCAGCAGTAATGTACAGTGGGAAAGAGATtgttcttttacttttatttaaaaggttACTTTATATTTGACTAATATTTCTCAGTATTGCTGCACCTGCTCAGCAGTAAACAGCTTTTCCACATTATGTCAGTCTAACGTCTAACTACACGAGGCATTTTGTCTGAAACAGAAGGAAACGAAAAAGTGCCTTTGTCTAAAAGAATACTGGATTGTTTCAGGAAATGCCATCTTAAAATCAAGTGCCACTGGACATCCCATCTGAACACAGGCTCCATGTTGTTTTAAATACCAAAGAGCCATGTTGTTCTCGTGTTTTCACTAAATGAAATGATCCACAGCGTTGTCTTTTAGTTGTTTTTGACATGAAGATATAAAGTGATTTGAAAAAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79098 lncRNA downstream 64670 3246081 ~ 3246397 (-) True G58852
TU79087 lncRNA downstream 71004 3233525 ~ 3240063 (-) False si:ch211-102c2.4
TU79091 lncRNA downstream 71004 3233525 ~ 3240063 (-) True si:ch211-102c2.4
TU79088 lncRNA downstream 77406 3232606 ~ 3233661 (-) False si:ch211-102c2.4
TU79048 lncRNA downstream 148940 3161885 ~ 3162127 (-) True G58818
TU79181 lncRNA upstream 120149 3435212 ~ 3467122 (-) True G58922
TU79190 lncRNA upstream 172900 3487963 ~ 3488550 (-) True G58931
TU79191 lncRNA upstream 174742 3489805 ~ 3490230 (-) True G58932
TU79192 lncRNA upstream 175657 3490720 ~ 3492557 (-) True G58933
TU79194 lncRNA upstream 181181 3496244 ~ 3496596 (-) True G58935
XM_039804453.1 mRNA downstream 17760 3272451 ~ 3293307 (-) True LOC120561362
XM_039804450.1 mRNA downstream 71013 3236050 ~ 3240054 (-) False si:ch211-102c2.4
XM_039804449.1 mRNA downstream 71013 3236050 ~ 3240054 (-) False si:ch211-102c2.4
XM_039804448.1 mRNA downstream 71013 3236050 ~ 3240054 (-) False si:ch211-102c2.4
XM_039804434.1 mRNA downstream 99068 3196486 ~ 3211999 (-) True traf2a
XM_039804424.1 mRNA upstream 753 3315816 ~ 3354947 (-) False LOC120561346
XM_039804427.1 mRNA upstream 753 3315816 ~ 3354844 (-) False LOC120561346
XM_039804426.1 mRNA upstream 753 3315816 ~ 3354844 (-) False LOC120561346
XM_039804425.1 mRNA upstream 753 3315816 ~ 3354844 (-) False LOC120561346
XM_039804422.1 mRNA upstream 753 3315816 ~ 3354844 (-) True LOC120561346
TU78857 other downstream 618545 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 622218 2686676 ~ 2688849 (-) False si:ch211-107p11.3
XR_005639531.1 other downstream 718321 2577875 ~ 2592746 (-) False ggt1a
XR_005639512.1 other downstream 1171439 2137796 ~ 2139628 (-) False ankrd39
XR_005639501.1 other downstream 1653020 1532053 ~ 1658047 (-) True rimbp2
TU79176 other upstream 82106 3397169 ~ 3397496 (-) True G58919
TU79177 other upstream 100564 3415627 ~ 3416854 (-) True G58920
TU79274 other upstream 373566 3688629 ~ 3689338 (-) True G58994
TU79517 other upstream 1109127 4424190 ~ 4430041 (-) False sub1b
TU79519 other upstream 1117781 4432844 ~ 4435068 (-) False LOC120560375

Expression Profile