RNA id: XM_039804479.1


Basic Information

Item Value
RNA id XM_039804479.1
length 2466
RNA type mRNA
GC content 0.47
exon number 12
gene id poc5
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17801445 ~ 17810258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAGCCAATCATAGAGTCTGTTGTTTAAGAGTCAGTCAGTTTGAAAGCAAGCTTTTTCTAACTGACGGAAACAGAAAAGCGTGGTATCCTgcatataatataaaacagatGTCCTCAGACGAAGAGGAACCGACCAGTCCTGTTCTGCCCAAGGACTCTGATGCAGGCAGCTCTGTCTCCTCTGAGCTTCAGGATGAGTATGAGGAGCTCCTCCACTATGCTGTGGTCACCCCCAAGCTTGACAGACTCACCAGTGCTCACTTGCAGCGGCTGGGCACCTCACATCTGTCTGCAGAGGGTCGGCCTTCCCAGAGAAAAGATAACACAAAATCACAATGCCCAGCAGCTGAGGAGATGGCAGGTCGGTCATCTAGCAGGGCGTCAGTGCTCTCAAACACTCCCTCAGACAGGTTACAGACAGTGTCTGAGAGGTCTAGGCCAAACAGCCCGCCCGCCTTCGAGTCCACTGTGACAGAGATGTTTATATCAGAGGAGAACATAAGCAAGATGGAGAACATTCTGGATACGTGGAGCAACAACCTGAAGACAAATGTGCTGACTGAGCTCAGGAAGTGGAAGCTGGCCTTTATGGAGCAACACAAGCTGGAGATgcgaaaagagagggagaggtatGCAGTCCAGACAGCTGGCTTGAGATCAGAGCTAGACAGCCTGAAGGGGCTGCTACACACCTACGAGACTTCCAACCAGAGAAAAGATGAGGTGATTGTGAACCTGAGCCAGGTGCTggacagacaaaaagaaaagcttGAAAAAATGAGGGCCTTCTCCCACTGGAGACTCCAGCACACTGCTGCCAAAGAAGAGGCTCATGCTGCTCAGGTAGCGCAGCAGCACTACAATTTGCAGCTGAAGAAGAAGGTGTGGTTTGGCTGGCAGTCTCTGATCCAGAAACACTGGAAGGTCAAGGTGGAGCAGGCTTGCCGTGCAAGGGCTGAAGAGGTCTGCACCCGCCTGTCTACAGAGTATGAGGCCAAGCTGGCAGAGCACTGTGAGGCTCTAGAAGGGGCCCAGGCAGAGATCCAAAGACTGCGAATTGAGCGAGAGCTCTATGAAGAATCTATGAAGAAAGCCTTCATGAGGGGCGTGTGTGCTCTCAACATGGAGGCTCTCGGCATGTTCCACACTACAGAGGGACGGCCGGAGCCCCATCCAGTTCATGATCAGCATGATAATCTGCCACCCCAGGATGAGCCTGGCTCTGCTACATTGGCTCAACTTCAGCCATATCCCATCTCTTCCACACGGTTCAGCCCAGTCCACTTTGACCGCCCGGACCCTTCCCACAGCGAAGTAGAGGATATGGTGGACTCTGGTGCCCCAGTGTCCAGGGCAGAAATGATCCCTCCTACTACAGTGGTTCACAGCTCACTGCCACTTGGGGGCACTGCAATTTCCCACAAACAGgTGAGCAGTCGTGTCGTCACAGCCAGTCAACAAAAACCCTCAAAGACTGTAACGGCTCGCATCACTGCACGTACGGACGTTGGTAAAGCTGCCCGCAGCAACCTCCAGGTGATGGGTGTGGCTCCACCCATGACCTCTGTGATAGTTGAACGCCATCATCCTGTTACACAGCTCACCATCGGTCAGGCGATGGCTTCTAAGTTTCCCCGCCCCTCCCAGCAGGGCCAAAGCTCCACTGGAGGCAGAAGCTCCTCCAGAACACACACCAGCACGTGCCAAGTACACTCCATCAAAGTAGTTGACTGACCACAAATACATATCTCAGACAGGAGTGACTTTGCACTTGCTTTCCGCTTTATTCATTAGaataaattagattttttttcagtttactctcgTGATTGTAGATAGTTTATTATGTGTCCTCAATGAGGACATTTTCTAATGTGCACGATTTCTTGAGCAATATTATTTTTCTCAGGAAAGTACTACACAGACACAGGTGTTTAGAACTGCACacgtaaatttttttaattataaccAGCTGGACAGAGTTTAGAATTGCAAAATGGACATTTATTTctagaaaaatgttttactcTAAATTATGCACAGGTGAGACTGTACTGTAATGACtgtagtatttattttattgatgttttttttaatgacacgGACTGTTCAACACCACAGGTTGTTTGCTTTATTAAACCAAAGCCATAATGATCtgacacacttttatttctaaaataaataattttactgGTAACTTTCTGTAGAGATCAGTAGTTGAAAAGGATGTAAACATGGAGTTTTTGTCATATCCATATGTTGCAGTGTTCATCCTCATGAAATGCTGCAGCTCTTACTGCTGGAACTCTCTGCCTCCATCCGAATCTTATCTGTAAGACAAATTAACATGTTCTGCAATAAGATTTTGGCACATGTCCCCTGGCAGCACAGCTATGTGTATAGATTCCTCAGtatatttgttttgatttaaaaaaatttaaaaaaataaactgaatgcaCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83396 lncRNA upstream 43388 17757855 ~ 17758057 (+) True G62280
TU83311 lncRNA upstream 228744 17568081 ~ 17572701 (+) False tmem167a
XR_005639496.1 lncRNA upstream 256537 17536842 ~ 17544908 (+) True LOC120560616
TU83301 lncRNA upstream 285348 17515654 ~ 17516097 (+) True G62217
TU83298 lncRNA upstream 308246 17492892 ~ 17493199 (+) True G62214
TU83414 lncRNA downstream 3331 17813589 ~ 17813813 (+) True G62294
TU83482 lncRNA downstream 128769 17939027 ~ 17940846 (+) True G62344
TU83519 lncRNA downstream 205147 18015405 ~ 18017448 (+) False thbs4a
TU83529 lncRNA downstream 244541 18054799 ~ 18056149 (+) True G62372
TU83579 lncRNA downstream 317278 18127536 ~ 18127745 (+) True G62406
XM_039803296.1 mRNA upstream 65496 17733568 ~ 17735949 (+) True f2rl2
XM_039803298.1 mRNA upstream 86380 17712920 ~ 17715065 (+) True LOC120560621
XM_039803299.1 mRNA upstream 86617 17712920 ~ 17714828 (+) False LOC120560621
XM_039803300.1 mRNA upstream 88664 17710190 ~ 17712781 (+) True LOC120560622
XM_039803297.1 mRNA upstream 97239 17641543 ~ 17704206 (+) True si:ch211-130m23.3
XM_039803576.1 mRNA downstream 14789 17825047 ~ 17850025 (+) False LOC120560752
XM_039803575.1 mRNA downstream 14794 17825052 ~ 17850025 (+) False LOC120560752
XM_039803577.1 mRNA downstream 14799 17825057 ~ 17850025 (+) True LOC120560752
XM_039803772.1 mRNA downstream 104678 17914936 ~ 17933428 (+) True kif2a
XM_039803774.1 mRNA downstream 104678 17914936 ~ 17933428 (+) False kif2a
TU83072 other upstream 1267296 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1325540 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1325548 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2024304 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 2182301 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 188428 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 520447 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 597129 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 605870 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 850899 18661157 ~ 18681161 (+) False acacb

Expression Profile