RNA id: XM_039804490.1


Basic Information

Item Value
RNA id XM_039804490.1
length 3882
RNA type mRNA
GC content 0.40
exon number 5
gene id dmrt1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31770292 ~ 31802453 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCTCCCACAAGTCACAGCAGCAGGGCGGGGAGGGACGGTGACCTTATAGCCTCTATCGTGGCACCAGTACAGGGCTTTAACCAGCCGAGCCTGCTGGGACGAACCCTTTAGTTGCTAAAGTCTGACTTTTGTTGTTCTTGGgtagtttagttttttgttgaGGTTTTATTATTCCAGTAGACATGAGTAAGGACAAGCAGAGCAAGCAGGTGCCGGAGTGCACCGGACCTCTGTCCCCATCTAAAGGCCAGAAACCCCCGAGAATGCCCAAGTGCTCCCGGTGTAGGAACCATGGCTACGTGTCTCCTCTGAAGGGACACAAGCGCTTCTGCAACTGGAGGGACTGTCAGTGTCCCAAATGCAAACTGATAGCTGAGAGGCAAAGAGTCATGGCGGCCCAGGTCGCCCTGAGACGGCAGCAGGCTCAGGAGGAGGAGCTTGGGATTTGTAGTCCGGTGTCTCTGACTGGCCCTGAGGTGATGGTAAAAAATGAAGCTGGAGCAGACTGCTTGTTCTCTTTGGAGGGACGATCCCCAACTCCAACCAGTACCTCTACTTCTTCTCATGCTGTCACAGGGAGTCGCTCGGCATTGTCCCCCAGCCCGTCAGCTGGTGCCCGCGCTCATACTGAGGGATCGGCAGACCTGCTGCTGGAAACTTCCTATTACAACTTCTACCAGCCTTCCCGCTACCCCACCTATTACGGCAACCTCTACAACTACCAGCAATACCAGATGCCCCATGGTGATGGCCGCGTGTCTAGCCACAACATGTCTTCTCAGTACCGCATGCATTCCTACTACCCAGCAGCCACCTACTTGAGTCAGGGCCTGGGCTCCACCACCTGTGTGCCACCCCTCTTCAGCAtcgacgacaacaacaacaacaacaataacaacaactgCTCTGAGACAATGGCAGCCTCCTTCTCCCCCAGCAGCATCACCACTGGTCACGACTCCACCATGACCTGCAGGTCCATCAGCTCCCTGGTTAACTCCGATGTCAGTGCTGAGTGCGAGGTCGGCAGCGAGACGCCAAACTTCACCATCGACTCCATCATCGATGGTGACGCCACCAAATAAAAGAAGCTAAGGATAACTTTACACAACAAAAGCATTTACGAGATCAGTTGATTAAAGTTACTGCAGTTACTGTTTGCTGCAggtttctctgtttctgtccAGGAGGCACGATAACGTATTTTCCACACCGTAGTTGAGAATACAGGTTGTCTTCGTATTTTAGCTAATTTTTAgctgttaaatgttttattgaagCCAGTTCACCAGCATAGAAAGTGCTCGGAAAGTAAAACAATGTACACGTTTACAAATAACATGCAATTACTTGAGAAGCATTCTCCAGAAGATAAAGATAACCAAACATACATTGAATAAGTCTCTTGATTATCAGTAATCAAGATTGGACCAAATTATTCAAACTAGACGGTTGTACACTAGTTTTTCCTCTTCGGAATTAGGCTGTTTGGATGAACCCTTTATAAAGGCGACTAAACGTAGAGTAAATAAGTGacgtgttgtgtttttgtaaaattgtaCCCTTGTTTTTCCTTTTCGGAAAGCAACTGTTAATGCAAAgtgaagtattttttttattatccaaAAGATAAAGTGACGCAACATGCTGAATAATGGTATTCAAATCCTTTTCTAGCATGCAGTAAAATTGACCAGTGCAGTTTTGACACGGTATGGTATTAGTGGACGATCTTTTGACAATCAGAATACAGGCTTAGTGTTTGCAATCACCGTTACTTTACATCTCAAGCACTTATTTAGAAATTTTCAAAGGCTAAATTTGGCCAAGTGCCCTGGTTGACATGCAATACATGTAGCATTATTTAGCAATAGCAATTGTTTTTTAGTTTGTattagtttattgtttttcagcTTTTGAAGTCTGTTTTGTGGTCCAGTTAACCAGTAGACAAAGTTGAGCCCATCCTTTTTAGTAAGCACTGATTTGGTGATTTGCAGGTCAAAAGATGTCAAGGTTAAATAGTAACTCAACACCAGGCTGAATAGCAGCGTTTTTCTGCCCTTTTTGGTTGACAGTTTCAAGTGGGTTTCACCTGTGTTACCAAACCCAACTGTGATGTCACGGTGCACCGACACACCCAGGAGTACACATCTACATCACTGCAACAAAGGGGAGAAGTTAAACCACTGGAGGTCAGCAAAATAAAGACGTTCAGGGGGTGTTAGGCTACATATAATAGTTGTTTCAACAGTATTTAAGtgactgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatttatgtatataaatatataaatattgtcaTTAAGACTTTGTAAAAAACGGATACTGGATTTTTGAGGATGAAATTTTTGAGGATGCTAAAAAACTTTTAGCATACATCGGATGCCAATTTTTCATAGACACATAAACATTTTTGATAAGGATTCCTTAAATTTTAACAAATTGTGACAATTAAGATAAGGTATATTTTATCAGACGTTATATAAACTAATTCATCTGGTGGTTTATTTAATGGTTTCCAAATTATTTCAAACATttctttggcatttctgtactGCAATTACTTGTTGACATGTACACCACTATGAATATATCTGCTGAAATTGGATAGCCTGAACTATTTATCCACCTAGCTCTATCAAAAACTTTCAAACCAAATATTGCCCAGATTTATGCCTAAACTAATGCCAAAGACATCTTTTGACCTGTTTGTACAGTATGAACAACGATCAGATAGTTTTGGAAAAATATGTGAAAacggcatttccttttgtccggtataaataaatgtgtcactgaattaaagtagaaaacaTCTCTGATAGAGACTCTGGGATATCCTCCTGCAGGACGACGTGTGACTGGAGGGTTAGCGGGGAGAAAAACAGGCAGGTTAGACATAAATCATGTTTCCCTCCGTTGCGTTGGCATGTGATGAGCACCGGCTGCTTATTTATGGCACCGATCCAGCAGCATCATTTATTCCACAGAATTTGCATGTCTATTGTATATTTAACCCCTTCAGGCCTGGAGTTTTACTGAACACATGGGTTACTGTTTACACAGCTTGGTACGGCCTTGTAGATACAGCGGTAGCTGAGGACCTGGATTTGTAGCAGTGATGTGTAGAGTTGAAACAATTTGTTGATTAGTTGACCCAGAAAATGAATCAGCAACCATTTGATAATCAGTTAATcatttaaggcatttttcaaGCAATGTTGTCTTAAATTGAAGTCAATTTTCTTTTGGATTTGGACTGTTGTGTGATGTCACTTTGGGATCTGGGAAAATGCCACTTTGCATTGTTTTCTGATGCTTTATAGACCAAAtaactaatcaattaataaataaataattagattaatctataataaaaaatgtcaaaaaattgttagttgtgtttttttaacataaataccTGGTCACAGTTTTGCTTTGTGTAAGTAAATACCCCAAAAGCAGTTTTTTCATTCCATGAACTAATGAATGTAATCCTGTGTTGCCCACTTTTGAGTTGTGTTGTTTGagtgttaattaaaaaaaacaactcatatGAGATTTTGCCAACTTTTCTGCCTTTGTGAAGCCGACTAGTACACCACTGTACTGCATATCGttgatgtgttttgtgttttatgtagATTCATTTCCAATTGCATGCTTTGaaagtgtttatttgtgtttgcGTTTGAATAAGACAGCAACAAAAGTAATTTGGAGTCTCGGAGTTTATGTCGCTACAACTTTTAGGTAAATAAAAACGCTTTAAAGtgatggagtgtaaatgtgatGCTGGAAACAACAATATAAAACAGACAAAGAGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639580.1 lncRNA upstream 6519 31762986 ~ 31763773 (+) False LOC120561307
TU88479 lncRNA upstream 6567 31759188 ~ 31763725 (+) True LOC120561307
TU88467 lncRNA upstream 259936 31461798 ~ 31510356 (+) True G66117
TU88608 lncRNA downstream 404466 32206919 ~ 32209511 (+) False adamts3
TU88639 lncRNA downstream 446548 32249001 ~ 32249240 (+) True G66253
TU88641 lncRNA downstream 488319 32290772 ~ 32291019 (+) True G66255
TU88699 lncRNA downstream 667906 32470359 ~ 32470825 (+) False mapk1
TU88701 lncRNA downstream 668732 32471185 ~ 32474048 (+) True G66294
XM_039804361.1 mRNA upstream 12788 31699526 ~ 31757504 (+) True kank1a
XM_039804359.1 mRNA upstream 12788 31699526 ~ 31757504 (+) False kank1a
XM_039804360.1 mRNA upstream 12788 31706370 ~ 31757504 (+) False kank1a
XM_039804362.1 mRNA upstream 12788 31726097 ~ 31757504 (+) False kank1a
XM_039804358.1 mRNA upstream 95177 31670525 ~ 31675115 (+) True ctsla
XM_039804487.1 mRNA downstream 5342 31807795 ~ 31811553 (+) True dmrt3a
XM_039802170.1 mRNA downstream 18216 31820669 ~ 31825718 (+) True dmrt2a
XM_039802942.1 mRNA downstream 103669 31906122 ~ 31966734 (+) True smarca2
XM_039802944.1 mRNA downstream 103669 31906122 ~ 31966734 (+) False smarca2
XM_039802945.1 mRNA downstream 103669 31906122 ~ 31966734 (+) False smarca2
TU88223 other upstream 884127 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 1192133 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 1518773 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 1520024 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 1520052 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 7179 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 323840 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 520054 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 562407 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 769235 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile