RNA id: XM_039804516.1


Basic Information

Item Value
RNA id XM_039804516.1
length 2195
RNA type mRNA
GC content 0.43
exon number 6
gene id gucd1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7658172 ~ 7663129 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAACATGAACAAACCCAAGTAAGAGGCTTCTCAGtgtgctagcaaacaacagctAACCGAAGCAGAGCTTCACCATTACAAAAACTTgccaaaaaaaatagtttttcttaCTTATATCTCGTATTTGTTTAGTTAAGTAATAATTGTATGTGCAGCAGTGGTGTGCGTTGAGGAGCTAGCTTCGCTGTATAAGCAGCGAACCTACCAACAGACTAGTTTACGTTAATACTGTTAGCCTGACAGCTAATACTGCAGTTGGGCAGCTGGTTTCTGCTACTAAGCATCCATGAAGAAACCCAACCGCGGCTTCAGTGCTGTAAACAAGACTGGCCAGCTTGTCttgagttaacgttagctagtggGCCGCTTGTCTAAGAAAGAATACAACAGAATGACAGAGGATGCCGTCTTGCTGAACGTTCCTGTCATTCGGCAGCTGTTCCACTGGGACTGTGGGTTAGCCTGCTCCAGGATGGTCCTGAAGTACCTCCATCCAGTCAGTGATGAGGAATTTCAGAGAGCATGCTGGGAGCTCAAGCTGACAGAGAGTGTGTGGACTATTGACCTGGCCTACCTCATGTGCCATCTAGGAATCAAACACTGCTTTTTCACGCAGACCCTGGGTGTTGATAAGGGCTTTAGGAATCAGTCCTTCTATAAGAAACACTTTGATACAGAAGAAGACAGAGTGAATGAGCTCTTCCTTAAAGCAGAGAGCAAAGGTGTGGTGGTAAAGAAATGCTCTGTGACAGTTCAGGAAATCCAGGCTCATCTGGAGCATGGCCACGTTGCCATAGTGCTGGTAAACGCAGTCGTCTTGACATGTGAACTGTGTTCCTCGCCTGTCAAATACTGCTGCTTCCTGCCTGTGGGCCAGAAGTGTTTCTGCAGGAAGCCAGAGTACCAGGGCCACTTTGTGGTATTGTGTGGCTTCAACAGGACCACTGGCTGTGTTTTCTACAACAACCCTGCATATTCTGACCGGGTGTGCTGCACCAGCGTCAGTAACTTTGAGGAGGCTCGGAGGAGCTATGGGACAGATGAGGATATCCTGTTGGTCTTTAAGGAGAGTTGATGGACAGTGAAGATGGGTTTAGATTTCACTCTTCTCCTCAGCTCATCATTGTAGTGATCTTCTGATGCTGCAGGTTCGACAGTCTCGGACTTGTGGCTCCCCCTGGTGTCAGTTGTCGCAGATCCCCTGGGCCCTCCTCTCCGGTGCTAATGAGCCCAACTGATGACATGGCTGCTGCAGATTCACCACTCTTATTCCCTCCTACACAGTCAGTACCACTCGACCCGTAAATGATCAACAGCTGGGAGTTTGAATAATCTAagttgaatttatttttttattccactttTGAGATAAGCAGGtagtttaaatgtattttattgcaTCTTTGTTGAATTTGAATGACCCATATTGGAGCTGTTGAAATCTCAAAGTGTGAGTATTTCAGATTTGTGAAACTGCAGTGGATAAAATGTGGGAATAATGACATAGAATAGGAATTACCAGGAAATAGCGTGCGCATAATTCAGGGCTGATGATGACAACATTTTAGTGTATCTAATTTATTTGTCCTGTTAAGTGTTGAAATCCTGAAGAGGCTCGTCAGCAGCCTCCAGCCTCACCTCCACATgccttttaaaaagaaatccttCTAACTCACCTCTACGTCACTTTTTATTCTGATGATACTATCGACAGGGAATACAGGAAGTAGTTTTGAGAGTCTCAGGTAATTTTTGCTCTGAAGTGTGACTTGCGTGTCAAATGAAAACTAGTTCAATGCAAAACCCCAAAGTTTGTCTGTGGAACTCAATCTGCCTGCAGAAGAACATGGACAATGGACTGACATACTGAAACATGAACTCATCAGTTTTATTCACTTaactggagagaaaaaaaaacagctcggCATTTTGTGTTTTGGTGTCGTGGCAACATGCTGGATAAATAGATACGTCGTATGGTTGTTTTGATCGGGTGGAAGGACAAAGGAGTAATTCTGACTCATGTTCTCTGTTGTGAAGACTAGGTCGTTTCCTCATTGTTACttagttttattttggtatTGTGTATATGTTTTTGCACTACACTTCAAACCAGACATAATtatgtgttatttaaataaatacaaaatttaCCATGTAATTgcttttctgaataaataaaaaatgatgtaTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80365 lncRNA upstream 11023 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 22118 7635595 ~ 7636054 (+) True G59837
TU80343 lncRNA upstream 26931 7630506 ~ 7631241 (+) True G59826
TU80351 lncRNA upstream 69542 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 82045 7574730 ~ 7576127 (+) False LOC120560567
TU80492 lncRNA downstream 211685 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA downstream 214039 7877168 ~ 7878371 (+) False atp2a2a
TU80483 lncRNA downstream 257648 7920777 ~ 7924556 (+) True G59931
TU80665 lncRNA downstream 563763 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 568875 8232004 ~ 8236195 (+) False G60084
XM_039803853.1 mRNA upstream 520 7649773 ~ 7657652 (+) True LOC120560946
XM_039803854.1 mRNA upstream 520 7649773 ~ 7657652 (+) False LOC120560946
XM_039802907.1 mRNA upstream 18763 7632692 ~ 7639409 (+) True LOC120560421
XM_039802908.1 mRNA upstream 18763 7632692 ~ 7639409 (+) False LOC120560421
XM_039802909.1 mRNA upstream 19042 7632692 ~ 7639130 (+) False LOC120560421
XM_039803852.1 mRNA downstream 158176 7821305 ~ 7845805 (+) True ift81
XM_039803270.1 mRNA downstream 184542 7847671 ~ 7877124 (+) True atp2a2a
XM_039803271.1 mRNA downstream 184556 7847685 ~ 7877124 (+) False atp2a2a
XM_039803275.1 mRNA downstream 225549 7888678 ~ 7900524 (+) True LOC120560607
XM_039803274.1 mRNA downstream 235434 7898563 ~ 7904594 (+) True LOC120560606
TU80342 other upstream 29098 7625807 ~ 7629074 (+) False zbtb26
XR_005639484.1 other upstream 34473 7600093 ~ 7623699 (+) False susd1
TU80145 other upstream 681370 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 980688 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2160418 5495155 ~ 5497754 (+) True G59347
XR_005639603.1 other downstream 21516 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 27545 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 29962 7693091 ~ 7693209 (+) True LOC120561498
XR_005639608.1 other downstream 34798 7697927 ~ 7698045 (+) True LOC120561496
XR_005639609.1 other downstream 36004 7699133 ~ 7699251 (+) True LOC120561497

Expression Profile