RNA id: XM_039804522.1


Basic Information

Item Value
RNA id XM_039804522.1
length 2322
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC120561412
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2365750 ~ 2434942 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCGTTCCTGTTGCTATACAACTGATTTATTCTTGATGCCACGGTCAGTCTAATCCACAGCAGACTGCGCCTTTTTCCCTCCGCTGTCCACATCTGAATCTGGATACATCCAACTTGTCGGGTTTGGACCTCAGTTTATTCCTCTCAAATGTCTTCACTTGCTCGGTTTCCGGTGTATTTTCTGCCACTTCACCTAGATTTAACAATTGGCGACTCggtgttttaaaatgtgtcttctaGCCTCCCCAAAGCACGCGCTCAACACTAGTGTCATTCTCACCAGGCTACAAGCTTGAGTGCGTCCATCCAAGGGCTGTGTGTAAGGTGGCAGTGTGAAATAAATATGCATTATCAAGCTGATGTTGTGCGGTAACGTGGGAAACTATATAGGCAGAGGTTGATGCGCACCTTTTGGAGCGGCTCACATCTCCGACAGGTGTGCGGCTGTGCGCAAAGCGGACCTGGCTGCGGCACAAAGTGCGTATATTTTCCGTACAGACAGGCGTCCTGGGTGCGTGTCCAACTATTTGGACAAAACGCCGAGTGCGTCTAACATGTGGACCTGGGACGCATGCAACAGAGAGCCATAACCATGAGGAGGAGCCGACACCGCGCAAATATGGGTCTTCTCGTGCTTTTCAGATGGCTTGTATTCACAGCGGTGGTGCCCGCCTGGCTGCTTGCTGCTCCAAGCGGCATCCGTGAGCGTCCCTGCCCCCAGAGCTGTAGATGTGATGGGAAAATAATATACTGCGAATCCAATGCCTTCCGTGACGTGCCAAGCAATGTGTCTGTAGGCACACAAGGCCTCTCCCTGCGTTACAACAGCCTGGTGAACCTCCGAGCCCACCAGTTTGCAGGCCTGAGTCAACTGGTTTGGCTCTACCTCGACCACAATTACATCAGTGATGTGGACGGCCAGGCTTTCCACGGGATACGGAGGCTCAAAGAACTGATCCTCAGCTCAAATAAGATCACACTGCTAAAAAACAACTCGTTTCACGACGTTCCGAATTTACGCAACCTAGACCTTTCCTACAATAAACTGCAGGTTCTCCGGCCTAATCAGTTTGTGGGTTTACGGAAACTACTCAGTTTACACTTGAGGTCAAACTCCTTAAAAACTGTCCCGATGCGAGTTTTCCTCGACTGTCGCAACCTGGAGTTTCTAGATATTGGCTACAACAGGCTACGGAGCCTCACGCGCAACGCCTTCGCAGGACTCCTTAAGCTCATCGAGCTTCATCTGGAGCACAACCAGTTCTCCAAGATCAACTTTGCTCATTTCCCCCGCCTGACTAACCTGCGGGCGCTCTATTTGCAATGGAACCGTATCAAACTGCTAACCCAGGGCCTGCCCTGGATGTGGACCTCCTTGCAAAAGCTGGACCTCTCAGGGAATGAGCTCCAAGTGTTGGACCCGAGTACATTTCAATGCCTCCCTAACCTGCAGACTCTTAACCTGGACTCCAACAAACTGAGCAATGTGTCTCAGCAGGCAGTGGAGGCCTGGATCTCCCTCACCACCATAAGTCTGGCTGGTAATTTGTGGCACTGTAACCCCAACATATGTCCCCTGGTGGCCTGGCTCAAGGCCTTCAAAGGTAACAAGGAGACCACTATGATTTGTGCCGGCCCCAAGGAGACACAAGGAGAGAAAGTGACCGATGTGGTGGAGGCTTATAACATCTGTACAGCGACCCCGGCCCCTGTTTCCTCAACACCATCGCCCCTGACTTCTGCTTTTCGACCTGAGCTGCTGCCTCTCCCTACACAGGCTGTCGTGGATAAGAAGCTGATCTGGAACAGGACAGCCTCCCCGTCTCCTTCCGAGGCCTCCCCCACCATCCCTTTGCCAGACACTGAGTATGTGTCCTTCCACAAGATCATAGCTGGTAGTGTGGCCCTCCTCTTATCTGTAGCTATAATTCTGCTGGTAATCTATGTCTCATGGAGGCGCTATCCCAGCAGCATCAAACTGCTTCAGCAGCGCTCGGTGGTTAAAAAGCGGCAGAAAAAGGCCCGGGAGACCGAGCGCTCCTTTAACTCACCACTGCAAGAGTACTATGTGGACTACAAGCCTTCACACTCAGAGACTATGGATGTGCTGGTTAATGGGACAGGACCTTACACATACACCATCTCAGGCTCCAGGGAATGCGAGGTATGACCGTTGCCCTCCAAAAATCCATTTCCACTGCGAGGCATGAGAGATAAGGCGGCAGCTGAGTGCTCTGACGTTGTACAGGTGTGAGCAGTCGGTTCTGGATTACTGCCATGCCCACCTGTCGCTGCACCTCAACGTGGGCATGGAGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78714 lncRNA upstream 53085 2309350 ~ 2312665 (+) False dock5
TU78625 lncRNA upstream 233476 2131948 ~ 2132274 (+) True G58478
TU78501 lncRNA upstream 275957 2074820 ~ 2089793 (+) False G58382
TU78502 lncRNA upstream 275957 2074820 ~ 2089793 (+) True G58382
TU78516 lncRNA upstream 294267 2067585 ~ 2071483 (+) True G58390
TU78740 lncRNA downstream 2337 2436384 ~ 2437472 (+) True G58574
TU78766 lncRNA downstream 89392 2523439 ~ 2523638 (+) True G58597
TU78767 lncRNA downstream 89594 2523641 ~ 2523934 (+) True G58598
TU78768 lncRNA downstream 90160 2524207 ~ 2524567 (+) True G58599
TU78770 lncRNA downstream 92005 2526052 ~ 2526270 (+) True G58601
XM_039803547.1 mRNA upstream 55576 2273678 ~ 2310174 (+) True dock5
XM_039802356.1 mRNA upstream 99007 2262909 ~ 2266743 (+) True LOC120560154
XM_039804148.1 mRNA upstream 162684 2192912 ~ 2203066 (+) True klhl22
XM_039804150.1 mRNA upstream 162684 2192912 ~ 2203066 (+) False klhl22
XM_039803644.1 mRNA upstream 205123 2157612 ~ 2160627 (+) True LOC120560792
XM_039802996.1 mRNA downstream 103907 2537954 ~ 2539133 (+) True LOC120560453
XM_039803790.1 mRNA downstream 126702 2560749 ~ 2577050 (+) True anapc5
XM_039804278.1 mRNA downstream 166843 2600890 ~ 2616973 (+) True lrrc75ba
XM_039804270.1 mRNA downstream 196457 2630504 ~ 2634683 (+) True asphd2
XM_039804271.1 mRNA downstream 196457 2630504 ~ 2634683 (+) False asphd2
TU78000 other upstream 2153380 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 444354 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1683232 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1990094 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1998124 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1998621 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile