RNA id: XM_039804530.1


Basic Information

Item Value
RNA id XM_039804530.1
length 4475
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC120561417
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21650457 ~ 21660743 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGAGGAGCGACAACAAACCGGAGATGGGACCGCGTTTACAACACGCCAAATAAGGACGACGACAGTTAAACACAAAGTCAATATCACACGGTTTGTTTTTGGTAAAATGTAGATCATTTGGCTCATGTTTATTTCGTACCTAACACGTTTAGTAGCTCGAATTACTATTAGAAAGTGTCACCACAACTCAGCTGTGAGACGCTGGGATGAAGGTGAAACTccattaacgttaacgttaagtACATTAGCTATAGTAATTctcagtaacgttagctacaacACTTCACCATGAACGAGGTGTGTGTCCGGGTGGCGGTCCGTATCCGCCCCCTGCTTCCCAAAGAAGTCCTCCATAACCACCAGGTGTGTGTGCGGGTGGTGCCGGGCTCCGCACAGGTGCTGCTCGGCTCAGACCGACTCTTCTCATTCGACCACGCGTTTGTACCGACGGCCAGCCAGGATGAGGTGTACGAGTCCTGCGTCCTGCCCCTGGTGGAGTCCCTGGTTGACGGCTACAACGCCACCATCTTCTGTTATGGACAAACAGGGTCAGGAAAGACATACACACTCGGAGGGGGGCACCTGGATGAAGAGGGAGGAATTATTGACCGTGTGGCCCAGGATGTGTTCTTGATGCTgggggagaagaggaagaacagTGATGGTGTGGAAGCCACAGTGCGGGTCTCGTATATGGAGCTGTACAGGGAGGAACTACGAGACCTGCTGGAGCTGCATACCATTCACAAAGAGCTTcacatcagagaggatgagaggggaaacacagtGGTGGTGGGAGCCAAAGAGATGGTTGTCAGCTCAGCAGAGGAGCTACTAAGTGTTCTAGAGACGGGCAATGCCCTGCGCCACACTGGAACCACAGGGATGAACGAGCACTCCAGTCGCTCTCACACCATTTTCACCCTTCAGCTTATCCAGTGTTGCCACAACAACAACTCCTCCTTAAAATCTGTCCGCTCTTCCAAACTCTGTCTGGTTGACCTAGCAGGCTCGGAGCGTGCTGGAAAAACTGGAAACACTGGGACACGACTCAAAGAGTCTGTTCATATCAACACAGGCCTGCTCGCACTGGGCAACGTCATCCGTGCCCTCTCTGACCCTGCTCGAAATCGCCGTGGTAACAACTGCAACAGTGCACACATACCGTACCGTGATGCCAAGATCACCCGTCTTCTCCGTGATTCATTGGGAGGCACCGCTCATACGCTGATGGTGGCGTGTGTAAGCCCCTCTCACCACAGTCTTGCTGAGACTCTGAGTGTCCTGCAGTTTGCATCAAAGGCTCGTCACATTCGTAACCGTCCTGGAGCTATATCTACTCATACAGAGGTTAAATCATGTCCTACAACCTGGGACCCTGGTGAGGCTCGACTGGGCGAACTTGAGTATGAAGTACAGACCCTGAGAGAGCTactgaaagagagggagagagagatggaaaaggTGCGGACAGGTAGAAGAGGTGGAGAGGGGGACGACTTCAAACAGCCCAGTCAGATGAGGATGTCTGATCCAGATAAGAAGGTGAAACAAGAGGAACCATCACAGTGCTGCCTCCTGGCACAGGAAGCTGCCGCCCTGCTTGCAGATATCTCTGGCCCCACTCCAAGTCATTCTTTGAGGCAGCGGCTGCAGGATTGGCAGGAGAGACTGACAGCTGTCAATCACTCACATCAAGCTTATGAGAAGGATTGTTCAGAGGGGAGTGGAGATCAACCCCACCATTTCACCATATTAAAGCTTAGAGAAGAACTCAACAGATGCAAGgAAGCTCTCAACATAGAGGAACAACTATCGGAGCAGAAAGATGCAGAGCTGAGACAGGTCCAAAGAGAAGTAGAGAAACTTCTTCAAGAGAATAAAACCCAGCTTCAGAACTTGGAGGAAGAAAAGGAACGTACGTGTATACAGACTGAACAACTTGTGGACCAGCAGATCATCATCAATCGTCTTCGCAGCGACCTTGTGACATTTAGGGGTGCAACCTCAGCGGCAACCGTGGAAACTGGGGCTTCTGGGGACTCAGGCAAGAGACCACACAGTGTCCCTCTGATCAGACATAGCTGTGGACACGGACCTCCCAGGAGGGTCGGTAGCTGCactgttttgatTCACTCTAGTCCCCCGGCCTATTCCCTGGAGAGAGTGATGGCAGCCTTTAAAATGCGGGGTCATCTCCTGCTGGCAGAGATTGAGCAGAAGGAAAAGGTGTACTGTCCATTCATAAAACAACAGGCAGAGAGCAAAGATGGGCATCAAgagaacgaggaggaggaggaggatatATTTGTGGGCAGAATGGGATTTAGGCGTTCTTTAAACCGAACATGGACCAGTCGGCAGAAGAAATTAACTCTGAAAGAGAAGAACTCTGGACTGGACCAAACATCTAATGGAGATCCAGTAGTACAACAGACTCAGCGAGTCACAGGGACTAAGGAAAACCACGCCAAGCATATGAGGAAGCCGAGACCGAGAGCCTGCGTTACTCAGAGAAGGATCCAAGAACTGTCTGTCAACATGAGCATGAAAGAGGAGCTCATCAAAAAGCTTGACAAAACTGacaaagagacCCAAGCAGTGGAAAGACATGGCAGGCACAGTGGTGATGGCAAAACAGTCGATGTGTTGGCAAGACTTTCCATGCAGAGCCAGCAGGTCCGTGCAGAGGTGTACCGCAGCCTGCAGCACATGAGGCTGCAGAGAGCACAGCTTCAGAGCAGCctcagacagcagagagagaccaacaacaacaaagaggtTGACCAAAATGGGGAGCAAAGGGCAGGAGATTTGACTGTGTGCAAAATCaaggaaaagCTGCCTGACTGTATTTGGCtggaggaggcggaggaggaggtgtTTCAGAAGAGAGCAGAGCtgcaggagctggaggaggagctgcggaggagagaggaggtgcTCCTGCGCAGAGAGGCCTGTCTGCAACAGAAGAACAAACTGGAGATCAAGATGCTACGCTCCAGCCAGGCTCTGAGTCAGGACCTGCTGCGTGTGTCGGTGCGGTTGGAGACTCTGGAGGAGCAgctgcagagcagcagcagtgtgaggCAGACCGGAGGAGTCACCATGGAGGaactggagaaagagagagacatgcttaaagagaggagagacactCTGGACAGCCAGCTGAAGGACAACCGAGTGCTCACTGTGGAGGAGGAGCATTCCCTGCTTCAGCTGGAGGAAGCTATTGAAGCTCTGGACGCAGCCCTGGAGTTTAAAAACCACTCAATTCATGACAAACAGAGGAAGTTGCTAATCACAGACTACTCTTCGCATCAGTTGCAAAGCACTGAACCCGCCCAActctgtgatgtcatcaggaaGCTGAAGAGGCTCTCGCCTCCTGAGGCGTCGGAGCTGCTCATCAAATATTTCAACAAGGTTGTTTGTCTTCGAGAGATGGAGCGCCATTTGCGTTTGCATTGTGAAGAGCTGGAGCTTCATGCTGGAGAGCAAGAGGTGGTGCTGAGGGAGATGGAGGTGGCCATGCAGCGGATGGCCCTGGATGCAGACCGCAGGCTGACCCAGCAGCACCAAGATCACCAGAACAACATCCAGCTACTGCTGCAGAAACTTAAAGACGGTGGCTCAGGAGAGGCACAGCAGGCTATCGAAGACAGACTGGAGCATCTGGAGAAAGAGCTTTTTTTCTACAAAAGCTCCAGCCGGCAGCTTAAAAAGAAACTCAAAGAGCTTGTCAGTGACGCTCTACACCCCCTCAATCAGCCCTCACAAACACAGGAGCACAGAAAACAACACAATGTGCAGATACACGCAAGTGCAAACGAACCCCAGATGCACACTGAAGAggtacagacacacaacacaacaacatacaaaaagatgaaagatgagcaaatagacaaaaacacattgaaGAGACATGCACACCAAACCCCCTGTCCCTCCGCCTCTTCTGACCTCCAAGCACGCAAATTGACAAAAATGCCCGAATACAACCAGACGCACACACAGTCCCGCGGGAGGAGTGAAAGTTTAGAGATGACACCAGTCCGTTTGTGTCGCAGAGAGCTGAGACAGATCTCTCCAGCTGACTTGCAGGTCTGTAGTTCTGCCACAAGAAGGCGACAGTCTGTTGTGGATACCAGCACAGAGTCAATACTAGAGGACTCCATAGAAGTGCCCAGAAACACTGACAGATGATGTTATCATGGTACATATGAGTCACTTGGCAGCAGCAGTGTGTACATCAGATTCCAGTTGGGTGCtagtaaacaaagaaaaatgtgtgttatGAATAACCAATGACAAAAACTCATTGCATATGAATGAAACATCCCCTCATCTTAAGTATCTTGTGAAAATGTTCATGTATTTGTTGGAAAATTGAAAGACTTTGCAGGGCTTTGAAGTCAGTGAGAAGCACCCAGAAACCCATTAAATTACTTCATATAATCAAAA

Function

GO: NA

KEGG:

id description
K24186 KIF27; kinesin family member 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639467.1 lncRNA upstream 29746 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 31855 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 163419 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 165791 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 302940 21346367 ~ 21347517 (+) True G63576
TU85373 lncRNA downstream 184089 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 214702 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 471141 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1243292 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1326438 22987181 ~ 22988040 (+) True G63914
XM_039804561.1 mRNA upstream 881 21642897 ~ 21649576 (+) True c6h9orf64
XM_039802564.1 mRNA upstream 8921 21627012 ~ 21641536 (+) True hnrnpk
XM_039802950.1 mRNA downstream 960 21661703 ~ 21672091 (+) True gkap1
XM_039802951.1 mRNA downstream 960 21661703 ~ 21672091 (+) False gkap1
XM_039802946.1 mRNA downstream 11464 21672207 ~ 21679064 (+) True LOC120560432
XM_039802948.1 mRNA downstream 11464 21672207 ~ 21679064 (+) False LOC120560432
XM_039802949.1 mRNA downstream 11464 21672207 ~ 21679064 (+) False LOC120560432
XR_005639510.1 other upstream 51658 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 972541 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1161619 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1161619 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2201507 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1269156 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2031919 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3162975 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3162976 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 4024229 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile