RNA id: XM_039804564.1


Basic Information

Item Value
RNA id XM_039804564.1
length 2455
RNA type mRNA
GC content 0.48
exon number 5
gene id ccdc92
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2037572 ~ 2054481 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCACGTCCCTGACAATCGCTGCTTCAACATTTCATCTCAAATAAGCTCAGGGAGATGATAGGAACTGACACAACCAGCCACCCTCCCCTCTCACCCGACCAAGGCGAGCCCCTGACAGCATCACCGACATGCCCCGCAAGGCAGAACGCTCTTAGTCGGTGAGGCCAGTCTATGTTCAGCGACAATTGACAACATTTTGCAAGATATTCGACGGCAGCGTATTTTTAGCCATAAGGTTGCAAggctggtgtgtgtctgtctgaacaTAATCAGCCATGGCATCAGCAAATGTTACACTGGAAAATCAGCTGCACAGTGCGCAGAAAAACCTGCTCTTCCTCCAGCAGGACCATGCCAACACGTTGAAGGGGCTACACGCAGAGATCCGCAGATTACAACAGCAATGCACAGATCTGACCTATGAGCTTACTGTGAGAAACTCTGATCCCTCAGaCAGCAGTGAGGCCCGCTGCAGGGAGCTGCAAAGGAGGTGTGAGGAGCTGGAGGCCCACCtcaagaagaaggaggaggagaacacAGAGCTGCTCAGGGACCTTGAGCAGAAGAACGCCATGATCTCTGTCCTGGAGAACACCattaaggagagagagaagaagtaCCTGGAGGAACTCAAGATGAAGAGCCACAAGCTGGCTGTTTTGTCCGGCGAGCTGGAGCAGAGAGCGAGCACTATTGCTTACCTCACCTCACAGCTTCACGCCACCAAGAAGAAGCTGTTAGCCGGCAGTTCATCCGAGGCCAGCCCCAACGTCAGTCCGGTCACCTCGTACAAGCCCACGCCTCCGCCGGCCAAGGACAGGCAGCCTGAAACCCCACGGCGTCGCATGAAGAAGAGTCTCTCCCAGCCTCTTCACCCAGAGTTAACAGAGGTGTATCGGCTCGGCCCGGACGGTAGACGGCTGGTTCTGCGGGAGACAGTAGATGCCATGCCTGACCCCACACCCTTCCTTCAGGCTGGGAGAGACTCTCCCGAACCGCAGGTAGTGCGAGAACGGCCTGCCGTTATCCCTCCTATTGCCTCAGAGCGCTCCCCTGTGGCTCCCCTGGGTGCTACGGCCAGCCCTCGTCACAGCCCCGCTCGGGACCGTCAGTACAGGGCTCACGTGGGCGTGGCGCATCGCATCCCACATGGCACCCCTCCCCTGGCTCCACCGCTAGCAGAGCTGGAGACACTGGCAGTGGACCAGGTCAAAGACGAAAAGGTTGTGCGGAAGCGCTCAGGAGCCGACAGGACAGTTTAACACTGCAACGCTAACATGCAcataaacgcacacacacatctactgTATACACATACTGCAAGAGCAGGAAGGAGCCTGACCCACTGTGTAGCTTGCTTTTTACGCAACACTgcaatatgaaaaaaaagtacataatTATTTTGTTCACGGTATCCCATAAAGACTTGCGTCTTTCTTGATCTACATTAGAAAAGGACTACTATAAAGCATGCCAAATGTTTCTTATTTACAACCCAATGAGATCTTGTATTATACACATCTTACTTATTCCAcaacgctgtggagataggtctggcaatgcgagactatacaCACCTTGACTTTTTTGCTTACACTTTCTCTTCATTCTGTCTTATGTGGTGCATACAACGAATCCTCAGCCAAATATCTGCATCAGTGCCTGCTCGACCGGATCAACCATACACAAGCTGTGTAGTGTAGTCATGGCTCATATATCTCTGTCTGCTCCATGTTCTCAACAGTCTGGACATATCAACAAACTATATAACAAGATGTCTGCAGCTGCATAGGGTAGAAGTGAAATTATTAAACTAATATTTCCCGAATGTCTTTTCATCTTCTTGTGATATCAGTATAATAACGTTACTGTTAAGTACAAGCTGCATAATGTGCAATTGAGATGTGCTGGCGAAAGGTGAAAGAGCTGTAATTTCACCTTTCTTTTGTTGGCTTGCAAAAACAGAAGCGGCGCACATGTGTAAATGCAGCGTGAAAGCATGGTGAACCAGacgtacatttgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgagagagagggagagagaaaatgtgtgtgtttcagagagaGACAATGAAGGCCATTGAGAGAATTAAGTTCTGGCTTAAACAATATCCGTTGAAGTTATTTGTGATACAAGggcatttttgaaaacactgcTGTAATAGGATTTTGTGACAATATTACCTGTACTTTATAAAGGCTGTGCATTTGTaatgaattcttttttttaatttattgtttaATAGGGAACACAAAATAACCTCAAATATTGACAGTAATCACTGCACCACCAACATGACGGTAATTATAATCAATTAATAACCTGCTTTTCAAATTAATATCACGTGTCCTTGAAGTTAACGTATGATTCAATACAATAAAGCAATGcatttttggtttgg

Function

GO: NA

KEGG:

id description
K16452 CCDC92; coiled-coil domain-containing protein 92

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78489 lncRNA upstream 86300 1933007 ~ 1951272 (+) True G58372
TU78455 lncRNA upstream 309239 1701907 ~ 1728333 (+) True G58347
TU78361 lncRNA upstream 475052 1476674 ~ 1562520 (+) True G58286
TU78366 lncRNA upstream 475052 1476674 ~ 1562520 (+) False G58286
TU78338 lncRNA upstream 680323 1356850 ~ 1357249 (+) True G58269
TU78506 lncRNA downstream 7593 2062074 ~ 2062569 (+) True G58383
TU78505 lncRNA downstream 7620 2062101 ~ 2062569 (+) False G58383
TU78509 lncRNA downstream 8139 2062620 ~ 2062956 (+) True G58384
TU78508 lncRNA downstream 8210 2062691 ~ 2062956 (+) False G58384
TU78510 lncRNA downstream 8210 2062691 ~ 2063002 (+) False G58384
XM_039804613.1 mRNA upstream 88857 1804636 ~ 1948715 (+) True ncor2
XM_039804617.1 mRNA upstream 88857 1804636 ~ 1948715 (+) False ncor2
XM_039804616.1 mRNA upstream 88857 1804636 ~ 1948715 (+) False ncor2
XM_039804618.1 mRNA upstream 88857 1804636 ~ 1948715 (+) False ncor2
XM_039804619.1 mRNA upstream 88857 1804637 ~ 1948715 (+) False ncor2
XM_039803640.1 mRNA downstream 85616 2140097 ~ 2156589 (+) True kctd9a
XM_039803644.1 mRNA downstream 103131 2157612 ~ 2160627 (+) True LOC120560792
XM_039804148.1 mRNA downstream 138431 2192912 ~ 2203066 (+) True klhl22
XM_039804150.1 mRNA downstream 138431 2192912 ~ 2203066 (+) False klhl22
XM_039802356.1 mRNA downstream 208428 2262909 ~ 2266743 (+) True LOC120560154
TU78000 other upstream 1825202 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 823920 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2062798 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 2369660 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 2377690 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 2378187 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile