RNA id: XM_039804577.1


Basic Information

Item Value
RNA id XM_039804577.1
length 1445
RNA type mRNA
GC content 0.49
exon number 4
gene id gadd45ga
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24213241 ~ 24215089 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGAAAGATTGTAATCTTGCCCCACGTGGGGTTGTCAACATGCTCAGCGTAACTGCCCGGGGACTTTTGCTTTCCTCATCACGACTGCTCTGAGCCAATGGTAGGAGGCATGAGCGGAAAAGACCGCCCATGCCGAGAAACTACGCTGATCTGCTATAAATCCACCCACAGACTGTTCCGAGCTCAGAATAACGCAAGAGACTACATAGAGAACTACacagccttttctgttcactgcAAAAATCTCGATCGCGCTTGGATTATAACTATGACTCTGGAAGAGATCCGCGGACAAGAGAACACAATGGAAAACGCAGATAGgGTGCAAAGTGCAGGCGCAGCCCTGGAAGAGCTGCTGGTCGCTGCTAAGAAGCAGGATTACCTGACAGTTGGAGTTTATGAATCTGCTAAAGTCATGAATGTTGACCCAGACAGCGTGGCATTCTGCGTCCTCGCCACCGATGAGGAGTACGAATGTGACATTGCTCTCCAGATCCACTTCACCCTCATCCAGGCGTTCTGCTTCGATAACGACATCAACGTGGTGCGCGTCAATGACATCGAGCGCCTGGCCGACCTCGTGAGCGCAGACGAGACCGGCGAGCCCAAGGACGCGCACTGCATTCTTGTCACGagcCCCAGTGCAAACCCATGGAAAGACCCGGCTCTGGACAAGTTGAGCCTGTTCTGTGAGGAGAGCCGCAGTGTGTACGACTGGGTGCCCACCATCACGCTCCCAGAGCGCTGAAGTGACATCCCACTAACAATGCTtcacatgatgatgatgaagatgatgaaaaGAAAGTCAAGGAGCTGAGCCTCAGTTGGGGTTGTGAAGCCTTTCTGCCTCACTTTCTGGATTAAGGGGCTGTGGCTGTAACCCCCTGCAAGAGCACAACCTACCAGTGCATTCTGGGTCAGCACGTTGGTTCTGGATTACCCTGAGGAAGGGTTCAAGTTCAGAAGTCAAGTGCAGACTGGGTCAGGTGAATGTGGAATGGACAGAAAGCCTGATGGACACAGAAGGATTTGGAATGTACTGCAAAGTGCATGAATAGACGAGAAGTGGCGTCCCTGCTGCTGCCCTAGTTAAAAGGCAATGGGGAACTGAGCGGAGCAGGTCACAGAGACCTTGCAAGAAATGGACTTGTGAAAGTGCAGAGGCTGGACTGAATCTCATCAGAGGGTAACAAGGAAGATGCTGGTTCAGAAGAAGGTGTCTGAAATGTCTAAATGGActtaacttttctttttacagtgCAGCTATCAGGAAGTTCTTGGAATAAGCAGAGACTTTGCTTGTAAATCCTGATTTGAGCTGTGTCTGAACCTGTGACACTTTCTCATggactattattattactttgaaATATGCAGACAAATATGCAATATTGTTTGAATTGTAcacatttttaatgttttgtgaatAAACATTTGAAATCAA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85984 lncRNA upstream 43713 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA upstream 44677 24164677 ~ 24168564 (+) False G64200
TU85970 lncRNA upstream 108889 24101506 ~ 24104352 (+) True G64188
TU85963 lncRNA upstream 154480 24049968 ~ 24058761 (+) True G64183
TU85948 lncRNA upstream 196173 24015078 ~ 24017068 (+) True G64172
TU86026 lncRNA downstream 19185 24234274 ~ 24234488 (+) True G64235
TU86043 lncRNA downstream 147386 24362475 ~ 24362909 (+) True G64251
XR_005639429.1 lncRNA downstream 299730 24514819 ~ 24518873 (+) True LOC120560123
TU86072 lncRNA downstream 606225 24821314 ~ 24822348 (+) False prxl2c
TU86073 lncRNA downstream 606225 24821314 ~ 24822348 (+) False prxl2c
XM_039802878.1 mRNA upstream 2799 24203522 ~ 24210442 (+) True creb3l3l
XM_039802877.1 mRNA upstream 10257 24181917 ~ 24202984 (+) True nim1ka
XM_039802876.1 mRNA upstream 10257 24181917 ~ 24202984 (+) False nim1ka
XM_039802875.1 mRNA upstream 31430 24174441 ~ 24181811 (+) True znf131
XM_039804015.1 mRNA downstream 606229 24821318 ~ 24823066 (+) True prxl2c
XM_039802659.1 mRNA downstream 608631 24823720 ~ 24837448 (+) True cdc14b
XM_039802660.1 mRNA downstream 608631 24823720 ~ 24837448 (+) False cdc14b
XM_039802663.1 mRNA downstream 608631 24823720 ~ 24837448 (+) False cdc14b
XM_039802664.1 mRNA downstream 608631 24823720 ~ 24833636 (+) False cdc14b
TU85875 other upstream 519950 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1283036 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2614442 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3535325 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3724403 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 608629 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 608630 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1469883 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1699293 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2197780 26412869 ~ 26414597 (+) True G64814

Expression Profile