RNA id: XM_039804579.1



Basic Information


Item Value
RNA id XM_039804579.1
length 2146
RNA type mRNA
GC content 0.47
exon number 5
gene id si:dkey-90l8.3
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12860590 ~ 12865252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTTGCGCAATTTGATGAATAGTGTCGCTGTCAAAAGCGTTAGAAACAGATGAAGGAATGTTGATAGATTGGCAGCTGTAACAGAAAGGACAGGAAGAGAAGCTGCGTCATGTCTCCTCCTCACGGTTACATGCAACGTTAGTTATTAACCTTCGGAGCTTGATGTCGGTGAGAGTTTGCTCAACTATTACCGTCACTGTGCCGTCCGTCCCGGGCTCAATGTTGTGTTGCGCTGCCTTTTTTCTGGAAAGCTATGGAGACCAGAACATGTCAAGTGTAAGTGTTTCAACTGTACGCGTGTCGAGGTTCTTGTGAATATTTTTCCACCTTCTCAAACTTCAACGCAGGAGGGAAACCTTTGGCTCGGCAAGGAGCCTTTGAGGGCCCACATCAGCATGGTGAACAGCCAAGCGTCGGGTGTACCGCCGACCCCCAGGTCGTGTGCAGGATGTGGGGGGAAGATCGCCGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACTCGTTGCCTCAAGTGCTCTTGCTGCCAAGCCCAGCTGGGGGACATTGGCACCACCTGCTACAGCAAAGGGGGCATGATTCTGTGTCGGAGCGACTACATCAGACTGTTCGGGCACAGCGGGGCGTGTAGCGCCTGCGGCCAGTCGATCCCAGCCAACGAAATGGTGATGAGGGCGCAGGGAAATGTTTACCACCTCAAGTGTTTCAGCTGTGCCACCTGTAGAAACAGACTGGTGCCTGGCGATCGCTTCCATTACATCAACGGTACAATCTTCTGTGAGCACGACAGACCCGGCGCTGTCTTGATCAACAGCCACCTGCCTCCACTTCAGAGCAACTCTGTGCTGACAGACCAGAAGGTATGCTGAGTGGCAGAAGTGCTGTGTCTTGCCCTCGCCTCCCCACCCCGAGCTTCACTTCTCTTCGGTGCACTATTCTCCTCCTGCTACTGTCGTTATTGTTGTGGAGTCTCGTCACTGCCCCGCTTCTTTTCCCCCGGGGGAGGACGCAATTTCTCACCAGGATCCCCGTTTGTCACCATATCAGAGACTCTCTATTCCGCATACGAAGtcacatttatgttgtgttcaatgtCAGAGTGGTCTGTGCATCATCAACAACTTACGTTATGTGTGGACTGCACTAGCAAAAGGCTTCTTCGGGATTTAGAGAAAGCTGTGGAGGAAAACAATGAGGATGAAAGCCTGCGCCGATTGGAAGAGGAAATAAAAGATGCTTGAATGAACACTTGATGGACTGCTGTAAAATGACTGTCAAAGGCTTTGCTTTGTGCCATGTGGCATTATTTCCCCTGAGCGTCAGTGTTTTTAATGAACTCTTGATCTCGCTCTCGAATATGTAAATCTGAGATCGTACACACTGAGGATTCAACACAAAATTGATGGGAGTCAGGCAAAAATCTGAGTATCTGAAAATGTTCATAGGTCATAGGAAACCTTgaaactaattaaaaaaaaaaaaacctacaccAGAAACTTTTGAAACTCTCAGAAATCACAGAAATCTAATGTTACTGTATGATTACAATTACTATACTtactactatttttttttttttcagatgccCTTCACAAAGAACTGAAATGATGTGAAGGTTTTGTTCCATTTCTTCTGTAGAGTTTTAGTTCTTTATCAGATGCCGGGTTCAATGTGTGAAAAACAAATTGTggggttaaaaacaaaaatcctaTTAAAATGATTTTTCTGTAACATGTCACGGAGTGAGCTGAGGTCATTTTGAAGCCCCTTAGCGGCATAAGAGTGGCATTGTATTGCATGGTACCTAGCATGGTGGATGTGACTGTTCTCTCTCGCTTTCTTTAGCCCTGTATGGTGAAAACATGCCTGATTACCCCGAGGAATGGAATTAGGGGGCTTGAGCTCTGACCATTTACAGAAGCAATTAAACATGAGCCCTGTATCTGTGCTGCTGGAGCTCTTGGGAGGCTGAACTTGGAGCATATCCCGTGGCTGACTGGCTCGGTGGCTGTCTGCTTCTAATAAAGCCTAATCTTAAAGCAGGCTAATTAAAGGGGAGTGGCCCCCTCTACATCCAGGGCATTTGAAACAATCTGATGTATTTACTGTTTACCATGTTCCAATTAAAGCTCCGACACAGA

Function


GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81877 lncRNA upstream 178522 12679709 ~ 12682068 (+) True G61091
TU81853 lncRNA upstream 221730 12638608 ~ 12638860 (+) True G61067
TU81834 lncRNA upstream 251132 12609104 ~ 12609458 (+) True G61053
TU81833 lncRNA upstream 252533 12607644 ~ 12608057 (+) True G61052
TU81831 lncRNA upstream 256380 12603756 ~ 12604210 (+) True G61050
TU81962 lncRNA downstream 134207 12999459 ~ 12999887 (+) True G61160
TU81973 lncRNA downstream 305541 13170793 ~ 13180491 (+) False LOC120560904
TU82004 lncRNA downstream 316330 13181582 ~ 13182257 (+) False G61192
TU82005 lncRNA downstream 316330 13181582 ~ 13182308 (+) True G61192
TU82008 lncRNA downstream 317367 13182619 ~ 13184450 (+) True G61194
XM_039802811.1 mRNA upstream 22683 12831272 ~ 12837907 (+) True ccn1l2
XM_039802813.1 mRNA upstream 22683 12831272 ~ 12837907 (+) False ccn1l2
XM_039802812.1 mRNA upstream 22683 12831516 ~ 12837907 (+) False ccn1l2
XM_039802808.1 mRNA upstream 66159 12752510 ~ 12794431 (+) False fkbp15b
XM_039802810.1 mRNA upstream 66159 12754699 ~ 12794431 (+) False fkbp15b
XM_039803769.1 mRNA downstream 44562 12909814 ~ 12932999 (+) False bcl2l16
XM_039803768.1 mRNA downstream 44562 12909814 ~ 12920471 (+) True bcl2l16
XM_039803795.1 mRNA downstream 266846 13132098 ~ 13180369 (+) True LOC120560904
XM_039804576.1 mRNA downstream 483889 13349141 ~ 13366210 (+) False lhx2b
XM_039804575.1 mRNA downstream 483890 13349142 ~ 13366210 (+) True lhx2b
TU81647 other upstream 933989 11926183 ~ 11926601 (+) True G60897
XR_005639564.1 other upstream 2108150 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 2108150 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 2108150 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 2113642 10726446 ~ 10746948 (+) False LOC120561142
TU81938 other downstream 55895 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 55895 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 1242231 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 1276190 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1418165 14283417 ~ 14283871 (+) True G61383

Expression Profile