RNA id: XM_039804586.1


Basic Information

Item Value
RNA id XM_039804586.1
length 4334
RNA type mRNA
GC content 0.53
exon number 25
gene id atxn2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25107957 ~ 25139788 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTGTCCCCTTTCAGACTGTTTTGGTCTTTTCGCTGTTAGCAACGGAAAGAACCCGAGATAGCTGTAAACCTTATTTTGAGATAATCGAATTTATTTGTTAGGATTACTCAACAAATTGACAAGAGGTGTAACACCGATGTTTATTTTGGAAGAGTGACTAGCGCGTGttgccttttttaaatattttttttcccccgtttTAATTGGAATTGTAGATTGCTAATTTAGATAGCAACTGTTGGCGAGTTGGCTTCTTAGCATAGCATCTTCCTCAAGAGGCACGTTGACATTACCCTGCTAGCTAGCCAGATCTTAGGACTGCTAACCTTAGCGAGCtgtcacacaatcacacatcgTCAAGAAATTGCGGTGTGAAGCTGGTCGTTTTAAGACGCTGTCTTTTATGGGATCACCATGTCAATGAAGGCCGGTGGAAATCGCAGCAAGCCCGGCGGTGGCAACACCGCTGGTGCCGCCGCCTCCGGTGCCGGAGGAAGCGGCGGGGGAAGACAGAATCTGGGCAGgggAAGACACAGTGGTAAAGGTCCGGCAGCAGTAATTTTCAATGGTGTATATGCAAATATGAGGATGGTCCATGTCTTGACTTCAGTGGTGGGGACCAAGTGTGAGCTGAAAGTGAAAAATGGAACAATCTATGAAGGAGTATTTAAGACGTACGGTCCAGAGTGTGACCTGGTGTTGGATGCAGCCCACAGAAAGAGCCTAGAGCCAAGCATAGCTCCCCGGAAAGAGGATATTGTGGAGAGCATAATTTTCAAGGCCTCAGATGTCGTAGTGGTGACATTCAAAGATGTGGACCTGAATTTCGCCAGGAAAGTCTCCTCTGACACAGACAACTTCACAGATACAGCGGTGAGCAGTAAGATCAATGGCGAGCATAAAGAGAAGGATCTAGAGCCCTGGGATGGAGGAGAGACCCACAACTCTGACAGCCTTGAGTCCCTGGATACAGATGTGTCAAATGGGTGGGATCCCAATGACATGTTCAAGTACAACGAGGAGAAGTACGGTGTCTTGTCTACATATGACAGCAGCCTGTCCACATATACGGTTCCCCTGGAGAGGGATAACTCAGAAGAGTTCCTCAAGAGGGAGGCGCGCGCTGCCCAGCTGGCAGAGGAGATTGAGGCCAGTGCCACATACAAGGCCCGTGTGGCCCTGGAGAACGATGAACGCTCTGAGGAGGAGAAATATACTGCTGTGGTGCGAGGGGAAAGGGAGACTCACACACTTAGCAGagagaacAAGTACATTCCTCCAGGTCAGAGGAACAGGGAGGCGATGTCCTGGGGACTGGGACGTCAGAATTCACCTCGTCTGGCTCAGAGCTCAGCTGGACCCTCAACTCCTCGACCAGGACCTCACGACTACAGTCCTAGCTCCGGGGCTGATCAGAGGGTGGTTAACGGCGGCCCACCCAGGATGTCTCCGAAATCCCAGCGGACGCCTCGTGCTCACAGAGTGCCACCCTGCCGGACCACTGGCGTTCCTCCAGGAGTGGATTTAATTTCCCACAATGCCACTGGAGAGGTCCCAGTGACTCCACCAACCAGGAGCAGCTCCTCTGGAGGGACATGGTCCTCGGTGGTTAGTGGAGCTCACAGACCTCGCTCCCCCCGACAGAATAGTATGGGTGGAGCCTCTTCtggctcctcctccctcccagcACCCCAGACAGGAACCGCTCCTGTGGAAACTGTTGCTACAGCAACATCCGcttcctctcctgctgctgctagccCCGCCCCCAACATGGTCGGCTCTTCTTCAGGAGATGCAAAAGAGTGTCGTGTCCAGGAAACAAGACAGACATCCCCTACGGCAAACAAGGAAAACATCAAACCCTTGGACAGCTCCCCTAGTATCACCAGACCAGTCTGTAAAGGACCCCCTTCTATTCCACCAGACCACAGAAAACAAATAGATAATTTAAAGAAATTTAGTGTCGATTTTAGGTTGCAGTCTAGTTCCAACCAAGACTCTGCCTTTGACCAGATGATGACCAAGCCTCCCAGAGATCCAGCAGACAAGGCAAAAGACCTTGCCCTGGACAAAGCCTCCACAGTGGGGCGGGAGGGCACTGAAGACGGTGTTGTAGTGAATGCGGCAGGCACCCCCGGTGGTGCCCCTGCTCCACCCACCTCCACCACAAACGCCAGTAAGCCTGGCAGCCCCGCTGCACTGTCCCCATCTCCCTCAGCCCCTGACCAGAAGAGGCCGGGGCTGGATGTGACATCACAGGGAGTTCAGACGACAGCCACGTCCTCATTCAGTGCACCCAAGcatgaagagaaggaggagaaaaggGAGGCAGTACAAGATCAAGTAAGAAAATCAACCCTGAACCCAAATGCCAATGAGTTCAAACCAAGGTTCAATACACAGCCCAAACCAGCCAACACCCCGACGCCTCCCCGGCCTCAGGGCCAGCCCAGCCCCTCCATCGTAGTCCAGCAGCCCCAGACTGTCTACAGCCAGACAGTCTGCTTCCCCCAGATGTATCCCCTCACACCAGTCAGCCCTGGAGTGCAGaaaagcataatatggaagTCTCCAGCCATGTACCAGGTTCAGATGCCTCATATGACAGTCAGCCAGTCTAAACCCTACAGACCAGGTAAAGTACCCAACATGCCCCAGCAGAGGTCAGACCAGCACCACCCGCAAGGCACGCCCACCATGATGCACCCAGTGACGGCAGCAGGACCCCCTATTGTAGCACAGAGCCCTGCCTACTCTGCCCAGTACTTCACCTGCAGCCCGCAGCAGTTCACCAGTCAGCCACTGGTCCAGCAGATGACACATTACCAATCACAGGCGCAGCATGTGTTCAGTCCCGTAATGCAGGGCAGTGCCAGGATGATGGCGCCTCCCACGCACGGCCAACCCACCCTTGTCTCTTCCTCAACTACACAGTACCCAGAGCAGACACACACCATGTATGTGTCTCAAGGGCCAATGCCTCAGCAGTACCCCCACCCCAGCGCCACCTTGCACCCTCACCCACAGCACCCCCAGCCCTCTGCCACGCCTACAGGCCAAGGCCAGCAGGGTGGTCCCCAACAACATGGAGGTCCTCCGAACCACCCAGCTGCCAGCCCAGTCCAGCaccagcagcaccagcagcacCAGCAGGCAGCAGCAGCGGCGGCAGCAGCCCAGGCCCTCCACATGGCCAACCAGGCACCGCAGCAGCAGATGTATTCTGCTTTGGCCCCCACTCCCCCCTCCATGACCCCGGGGCCCAACCCTCAGTCTCCCCAGGCATCGTTCCCCTCTGCCCAGCAGACGGTCTATATCCATCCACAGCAGGTGCAGCACGGCTACAACCACAACCACATGGCACACGTGCAGCAGGCCCATATGCAGTCTGGTATGGTGCAGTCTCACCACCCGGCGCAGACCCACCCCACGATGATGCTGATGGCTACCCAGGGTCCTCCAGGGGGTCAGCCACCTATGCCCCAGACTGCCCTCAACCCCATTCCCGTTTCCTCCACCACACATTTTTCCTACCTGGCACATCCACAAGTGCAAGctcatcatcagcagcagctgTAGATAGAGGGCGCCAGCGAGCTGTGGGACCCGCTCTGCGGCGCGCTTCTCAACCAGAGCCTTCATAACCAGGCGATGAAGAGAAGGAGAGCCCTCTCTTTCCTCATCCTCACTGGACATGCTTCACATCAGCTTtttctcttcccccccccccccccagactaGGCAATAAGAGAATGTTAACCGGTTGATGCAGTGACATGTTTTAACGAGCTAGAGAGTTTTAATGGGTAAGACTGCTCTTCATTCAGCccctgttcacacacacacacacacacacacagaaacatacatgaacaaaacacccacacacactttcaggGGTCCCAAATTGCAACTTGAGTCAGCTTGCCAAGTAAGATGTGATAGCGAGAATGAGAGAAACTAATCCGAgagagtgaagaagaagaaaattcaACTGGAACTTGTATTCTGTCTGCACCttgttctgaaaaaaaaatgtatcttccAACAGTATTAATCTTACTGTTTATTGCTGCTGCTATGTGCTGCGTTTGTTTCCAGACTACATGACAGGTTTCTaaccaaactaaaaaaaaatgaaacatgaCAAAAAGCTTCTGTGAAATAAACACGTTTTGGCAGCCAAGAGGACAGGAGAAACGTTATTTATGAAATTATAATGGCTGAGGTGATCAGATCCCACTTCTCACCTGACCCTTATGTAACTTTTAAGTTAAAACTTTTACTTTGtagataatataaataatttaaaaaatgagcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639412.1 lncRNA upstream 67060 25034709 ~ 25040898 (+) True LOC120560056
TU86090 lncRNA upstream 215441 24876562 ~ 24892517 (+) True G64287
TU86081 lncRNA upstream 245228 24860249 ~ 24862730 (+) True G64279
TU86075 lncRNA upstream 284907 24822491 ~ 24823051 (+) False prxl2c
TU86073 lncRNA upstream 285610 24821314 ~ 24822348 (+) False prxl2c
TU86234 lncRNA downstream 70136 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 119928 25259716 ~ 25302920 (+) True G64450
TU86352 lncRNA downstream 366376 25506164 ~ 25506568 (+) True G64489
XR_005639499.1 lncRNA downstream 408235 25548023 ~ 25552264 (+) True LOC120560635
TU86357 lncRNA downstream 408363 25548151 ~ 25551497 (+) False LOC120560635
XM_039802788.1 mRNA upstream 19312 25080307 ~ 25088646 (+) True ostf1
XM_039802720.1 mRNA upstream 84270 25019069 ~ 25023688 (+) True LOC120560335
XM_039804133.1 mRNA upstream 107494 24974347 ~ 25000464 (+) False loxhd1b
XM_039803497.1 mRNA downstream 93427 25233215 ~ 25259169 (+) True hsd17b4
XM_039803496.1 mRNA downstream 93710 25233498 ~ 25259169 (+) False hsd17b4
XM_039803025.1 mRNA downstream 196236 25336024 ~ 25445140 (+) True sema6a
XM_039803026.1 mRNA downstream 196236 25336024 ~ 25445140 (+) False sema6a
XM_039803027.1 mRNA downstream 196236 25336024 ~ 25445140 (+) False sema6a
XR_005639471.1 other upstream 273327 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 273338 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1414667 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2177753 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3509159 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 545184 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 774594 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1273081 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 1354547 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 1354547 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile