RNA id: XM_039804603.1


Basic Information

Item Value
RNA id XM_039804603.1
length 1290
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120561461
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26797823 ~ 26799241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTCCCCTTCAACATCACAGACTCTATGACAAGAGTACCTCTATCGGTGGACTTTAACAATCCTGAAGattattttatctttattttccaGATTTTATTTGCAACAACTACTGTTCTCATAGCCGGACCTGTAGTCATTACCATATTGGCCACCAGAGCTCTCCGCCTCCAAAACAGGTTCATTTTCATGCTAAATACTAGCATTTGTGATACGTTGGTTGGGTTTTCTGTGTATTATCTCGGCTTGTTTGATGTTCAGGAGGGATATCCGTCTAGAAATGGAACGTATAACATTTTACCATCACTTCTAGGGGTCAATATATTGACGTTTTTGTTTGCACAGTTTGACCGGTATTTTGCTGTGTGCCATCCATTCATCTACAGTCGCTTCATAACAAGACAGTTTGTGATAGGCATTAACATCTACTGCTGGGTTTACAATGTTGCTCACTTGATCACCAGGAATTTGTTGCCACTTTCCAAAGCCATACAAATGTACGTATTCAGCATTGTCATCTTTCAGCTAATCGTGCTCACCAAAGTGGTCATGActgttaaactgtatgttatTGCCAGATTCCAGCTTGCCAGAGACCCTCCCAGTGCCGACAAAGACAGCAAGAAGGAGTCATTGAGAATCATTATTTTTGTTGTCATAAGCTTCTTAGTGTTGTGGTGTCCctcttttattaatattatcatCAGATTTGTGGTAGGAGGAGGGCTGACGTTTAGGAACGAGGCCACCAATCTTTTCGCCATCATGGCTCGTTTTAACTCTGTGTGCACACCGTCTGTGTATATCTGGGGGAGTCCGGCTCTCAGGGAAGCCATGGTGAGGACAGTGTGGGGCAGACTGTGCCCAAGATGCAAGAGGAGAGTCGGCTCCTGTCATGGGAAGGGAAATGCCAAAAAGTGATGGAAATACCGAGAACCTACAGACTCCATACAGCACATTATTCTTATCAACTGTGTGTTTttgccatctctctctctgaataATGAGTTTCCATCACTGGATCTTACCAGGTCATCTTAACGTTTCATCTGAATTAGCGGTTGATTCAGTGTCCTGATAATGATCCCACACCCAAACAGCTATTCATGTTAAATATCAAACTAGTGCTGTGCTCTGAgaagtagtaggctatacagtagCATTTTTTTCACGTGTGTTTGGGCATGGTATATTACCTATACGTTTCTTTCTATGTTACTATAAGCAGTGTTGCTGTCCATGTTGTGTGGTGCTGAATCGGCCTATTTCAAAAGTCAGTTTGAGGGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86940 lncRNA upstream 113568 26682518 ~ 26684255 (+) True G64944
TU86926 lncRNA upstream 134297 26662767 ~ 26663526 (+) True G64930
TU86879 lncRNA upstream 217010 26572244 ~ 26580813 (+) True G64893
TU86818 lncRNA upstream 257187 26540415 ~ 26540636 (+) True G64841
TU86816 lncRNA upstream 257600 26538658 ~ 26540223 (+) True G64840
TU86978 lncRNA downstream 94460 26893701 ~ 26896143 (+) True G64967
XR_005639508.1 lncRNA downstream 98661 26897902 ~ 26899558 (+) True LOC120560738
TU87101 lncRNA downstream 237812 27037053 ~ 27039599 (+) True ndufs4
TU87102 lncRNA downstream 239569 27038810 ~ 27039599 (+) False ndufs4
TU87114 lncRNA downstream 400708 27199949 ~ 27200190 (+) True G65083
XM_039804019.1 mRNA upstream 3251 26793691 ~ 26794572 (+) True LOC120561053
XM_039804018.1 mRNA upstream 6759 26790198 ~ 26791064 (+) True LOC120561052
XM_039802267.1 mRNA upstream 78707 26687332 ~ 26719116 (+) True pi4kab
XM_039802266.1 mRNA upstream 78707 26687398 ~ 26719116 (+) False pi4kab
XM_039802265.1 mRNA upstream 78707 26687398 ~ 26719116 (+) False pi4kab
XM_039803534.1 mRNA downstream 30810 26830051 ~ 26837172 (+) True utp15
XM_039803526.1 mRNA downstream 38031 26837272 ~ 26876951 (+) True LOC120560731
XM_039803527.1 mRNA downstream 38031 26837272 ~ 26876951 (+) False LOC120560731
XM_039803528.1 mRNA downstream 38031 26837272 ~ 26876951 (+) False LOC120560731
XM_039803529.1 mRNA downstream 38031 26837272 ~ 26876951 (+) False LOC120560731
TU86927 other upstream 139854 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 155342 26614237 ~ 26642481 (+) False cltcl1
TU86790 other upstream 301437 26494335 ~ 26496386 (+) False c6h22orf39
TU87117 other downstream 405993 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2550883 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3387607 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 3447646 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 3448698 30247939 ~ 30250268 (+) False LOC120560820

Expression Profile