RNA id: XM_039804605.1


Basic Information

Item Value
RNA id XM_039804605.1
length 4241
RNA type mRNA
GC content 0.44
exon number 20
gene id unc45b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17900473 ~ 17909716 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGAGAGACCCAGGTCAGCAGGACACTGATTATTACCAACAATGATGGGAGACCCGATCCAGTTAAAAGATGAGGGAAACAAACACTTCCAGGCAGGAGAAACAGACAAGGCTATTGAGTGCTACACTAAAGCCATAAAGGCGTGCAAGGACAACAAAGTGCTTGCTGTCATTTACAGGAACAGATCTGCATGCTACCTAAAACAGGAAAGCTATGCCAATGCAGCATCTGATGCATCTAAAGCAATTGATGTTGATGCAGCAGATATTAAAGCCTTGTACCGGCGTTGCCAAGCTCTGGAGAAACTAGGAAAACTGGACATGGCCTTCAAAGATGTGCAGAGATGTGCCACCATTGAACCAAAGAATAAGACCTTCCTGGAGACTCTCCGCAGGCTAGGAGCAGAGATCCAGGCCAAGCTCAAGACAACATTCTCCACAGATTCGAGGGTACAGAACATGTTTGACATTCTCCTTGATGACGAAATGGAAAcggaaaagaaggaaagaGCTGCCAACAACCTGATTGTGCTGTCAAGAGAGGATGCCGGAGCAGAGAGAATCTTCCAGAATAACGGAGTGCCTCTGTTGCTCAACATGATAGAGTCAGGCAAACGAGAAATGATCCTGGCTGCTGTTCGTACTTTGTCAGGAATGTGCACAGGACACAAAGCACGGGCCATGGCCATTATTCACATGGTGGGCGTTGATAAGATGTGCAGCATCATGGCTGTTGACAATGAGGAGATCGCACTGGCAACCTGCAACCTCTTCCAGTGCATCAACGACTCCCTCACTGGTGGAGATAAAAGAGAATATGGGAAAGAAGAGGCCTTGGTTTTGGATGCATCTAAAGACCTTAAAaccatcctcctctctctgttggAGATGGTTGCTAGTAAGAAGGTGCCTGGCCATGGCAGAGACCAGGCACTTAACCTCCTGAGCAGGAACGTACCTCGCGCTaacaagaaagagaaagacaacTCCAGGAGCCTCTTCACTATTGACCATGGTCTGAAGAAGATCCTGAAGGTGTGTGGTCAGGTTCCCGAACTGCCAGACCAGCTGCCCATGACAGAGAACACACAGCTTATTGCCAGCGTGCTTCTCGACAAGCTCTATGACGACCTCATGTGTGACCCAGAGAGAAACAACTTCAGGGATATTTGTGATGAATATATCAAATCCAAAATTGACCCCAACGACATGGACAAGACCATTCATGCTATCAACACTATCTCAGGGCTGCTTCAGGGTCCGTTTGATGTTGGTAACGCCCTGGTTGGCAGGCAAGGCATAATGGAGATGATGGTGGCACTTTGTGCCTCCGAACGTGAGGTGGACCAGATGGTGGCTGTGGAGGCGCTGATCCATTCCTCCTCGAAGATGAGCCGCGCCTCCTTCATCATCACCAATGGGGTGTCACTGCTTAAGGACATCTACAAGAAGACCAAGAACGAGAAGATTAAAATCCGTGCGCTGGTGGGTCTCTGTAAACTGGGTTCAGCTGGAGGGGATGATTACGCTTTAAGGCAGTTTGCAGAGGGTTCCACAGAGAAGCTGGCCAAGCAGTGCAGAAAGTGGCTCTGTAATCCCCAGATTGATACAAAAACAAGGAAGTGGGCTATCGAGGGTCTAGCTTATCTGACTAATGATGCTGACGTGAAAGATGACTTTGTTGAGGATGAGCCCGCCCTGAAAGCCATGTTTGAACTAGCCAAAtCTACAGATAAGACAATTATATATGCGGTCGCTTGCACCCTAGTTAACTGCACCAACAGctatgaaaagaaagaaatcatgcCCGAGCTTGTTCAACTTGCCAAGTTCTCAAAGCAGCATGTGCCTGAGCAGCACCCCAAGGACAAGAAGGACTTTATTGACAAGAGAGTGAAAAGGCTGCTGAAGGCTGGAATCACTTCAGCTCTTACTGTCATGGTGAAAGCTGACAGCACCATCCTGACCAACCAGACCAAGGAGATGCTGGCAAGGGTGTTCTTGGCGTTGTCACAGGATCCCAAAGATCGTGGTATAATTGTAGCCCAGGGTGGGGGAAAGGCTTTGATTCCACTTGCTCTGGAAGGGACAGAGATTGGAAAGACGAGGGCCAGCCACGCCCTTGCCAAGATTGCAGCTATTTCCAACCCAGAAATCGCCTTCCCTGGTGAGAGGGTGTATGAGGTGGTGCGACCTTTAGTTAGCCTCCTTCAAACAGACAAAGACGGTATGCAGAACTACGAAGCTCTGAAAGGCCTCACCAACTTGGCTGGTTTCAGTGACAAACTAAGAGTAAAGATTTTGAAAGAGAAAGCTCTGCCAGAGATCGAGAACTACATGTTTGAGGACCATGACCAGATCAGACAGGCTGCCACTGAATGCATGTGCAACCTTGTTACATGTAAACAGGTCCAAGAGCGTTACCTGGAAGATGGCAATGATAAGCTGAAGCTAATGATACTGCTATGTGGCGAGGATGACGACAATCTTCAGATAGCTGCAGCTGGAGCTCTCGCCATGCTTACTGCTGCTGAGAAGAAGCTCTGCAAGAAACTGACCCTGGTGACCACCCAGTGGCTGGAGATCCTGCAGAGGTTGTGTCTCCATACCAACCCTAATGTTCAGCATCGTGGGCTTGTGGTTGTCTTCAACTTGCTCAACTCAGACGACAGTGAGCTGGCCAAGAAGCTGATCGAGAGCGAGCTGCTGGAAATCCTCACAGTGATTGGCAAGGCGGAGGACAATCCCAGGAGACAGGGGGCCATCGATGCAGCACGCACATGCCTGGTCAAAGCTATGGATCTTGGTCTCATCAAACCGTTCTCTAGCCCTTCTTAAATTGCtgacaacaagaaaaacaacaacaatggacatccttctttatttccttttaaacactttttttccaaatgttttcCCCTACATCAAAGATATGAAAGTATTCTCCAACCTGACTTCaaatctcttaaaataatctctcacaatataatatatgtttttttgtttacataagCTGTTTGGAGCTTTTGTAGTATAATAAGAAGGGGAAGCATCTCTTCTTTGTTTTGAGAAGaagaaatgtattatttatatttgtgCTGTTAATGAATGTTTAGAGACTGACCATTTTACATGTGTTTTTTCCACTGTTAGAAAGAACACATTTCCATAAACAGAAATATAAGACAGCCCAGCTTGTGACTTGACTCAGCACATGGTGGAAATATTGCTTTGCAGATGAATACATGAAAGGCAATTGCATCATTTTGATCGTTATCACCAAATGCAAAACCTAcagagtttgaaaaaaaacaaaaaataggtGAGCTAAGTAAAGTATTGATTAAACCCAGTAACAATAGAAAACTCTGACTGTAATAAGGGCTACAAATGGTTTTAAATTACACAACTTACTTCAGTAACTTGTTTTGCCCTTTTGAAAACTTTTTGTTAAACTCAGTTGCCCACATATGTTCCAGACCAACTTCTTGTAAATTGCAGACATCTACCAAAATAATTTGTGACACATTTTCTAAAGAACTGCATCTTGCTTACTGGAACATACCACCATTTCCTGTCTTCCTGTCGTCATCTTTACCCCTCACGGTTTCTTTTATAATTCTATACCTTTAGGGCCTTCTCTGTTAAGCCAGAATGAAAGGTGTTTTACAGCATTTAAATTCACCATTAAAGCCAGTAATACCAGTAATaccattatttttgtttaactaAGTTTGGACCTTAATTTTTTGATGGTGTTAAAAAGACATCTCTGGCAAACCGTTTCCTATCTTATGCTCAATATCGTAGCCAACTTCTCAGTTCAGAGAGGTTTTGTAACTCAaaaatgcatgctgggattaCATTGTGTTCATGCCATAATTCATAGGCTATATAActgttatggttaaggttttaACTTAGAACTGTTTTGACAATCATTGTCGTGGGTGTATGGGATTTTGCTGCTGAGGTGAATCAGAGTGCAGGGTCTCTGCAAGGAAGACTTCTGATGGAAAAATGCACGTGACAGTTGGTCACTTCTCATTGTACCTTCAAGTTACTGTAAATTACGTAACTCGTGTAATCATGTGAAGGCCTAAATTGACTCAAATACGGTAGATCATtgactctgtgtgtatgttaaaACTGCTCATAATGATTGCACTTATAATTACAGATAGGCCTATAACACATTGTAATTGTAGTTTTAGATAGggaagtaaaagttttttttttca

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030239 myofibril assembly biological_process
GO:0030018 Z disc cellular_component

KEGG:

id description
K21991 UNC45; protein unc-45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639419.1 lncRNA downstream 646 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA downstream 647 17896791 ~ 17899826 (-) False LOC120560086
TU83447 lncRNA downstream 58021 17841719 ~ 17842452 (-) True G62318
TU83322 lncRNA downstream 323921 17576219 ~ 17576552 (-) True G62231
TU83321 lncRNA downstream 324524 17575641 ~ 17575949 (-) True G62230
TU83469 lncRNA upstream 5567 17914926 ~ 17926955 (-) True G62333
TU83475 lncRNA upstream 22383 17931742 ~ 17933468 (-) True G62339
TU83567 lncRNA upstream 145892 18055251 ~ 18055851 (-) False G62399
TU83570 lncRNA upstream 145892 18055251 ~ 18056143 (-) True G62399
TU83626 lncRNA upstream 325246 18234605 ~ 18235686 (-) True G62452
XM_039803673.1 mRNA downstream 4578 17853406 ~ 17895895 (-) True pip5k1bb
XM_039803674.1 mRNA downstream 17382 17853406 ~ 17883091 (-) False pip5k1bb
XM_039804298.1 mRNA downstream 75730 17815832 ~ 17824743 (-) True polk
XM_039804481.1 mRNA downstream 85201 17810049 ~ 17815272 (-) True ankdd1b
XM_039803302.1 mRNA downstream 107979 17762435 ~ 17792494 (-) False sv2ca
XM_039803593.1 mRNA upstream 26017 17935376 ~ 17940540 (-) True dimt1l
XM_039803594.1 mRNA upstream 31243 17940602 ~ 17944550 (-) True cenph
XM_039803327.1 mRNA upstream 58219 17967578 ~ 17988335 (-) False homer1b
XM_039803326.1 mRNA upstream 58219 17967578 ~ 17983579 (-) True homer1b
XM_039803328.1 mRNA upstream 65373 17974732 ~ 17988335 (-) False homer1b
XR_005639516.1 other downstream 4576 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 295353 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 295353 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 295353 17598088 ~ 17605120 (-) True LOC120561236
XR_005639495.1 other downstream 332459 17541396 ~ 17568014 (-) False LOC120560614
unassigned_transcript_262 other upstream 50454 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 383897 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 389542 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 468243 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 473646 18383005 ~ 18386269 (-) True G62582

Expression Profile