RNA id: XM_039804617.1


Basic Information

Item Value
RNA id XM_039804617.1
length 8035
RNA type mRNA
GC content 0.56
exon number 46
gene id ncor2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1804636 ~ 1948715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGGTCTCAGCAGCAGCGGCTTAGAGACTATAGTGTTGTTAGTCCACTGTTGTGCAGGAACAGACAAGGCATAGCTGAAAACCGCCAGCGGAACAAATGAAAACGAAAACTACTCTTTGATGTGGATTAATTCAGGGGCGAGACACTCAATCGAAGCGAGAAGCTCTTTAAGCGAATTTGGACCGACTGACGAGGATTGGGACGTTTGCTACTGTACGATAGCACCGCCGAATGGTTTCTCTTGCCCCGCCGCTAAGGTTGCTGGCTAACAGAAACGGCCAATAATGCACAGCATCTGCTCTGCAGCCACACCCACTTCCTGCCTGTAGAGGAAGCGGCTGTGCCAGCATGTCCTCTCATCCCCAGTCTGTGCCGCCAGGCCGGAGGACTGTGGACACACGGCACCTGCCAAACCCTGCCAGTCTACCCCTGCAGCTGCAACGGGCACACACGGAAGTGGGACTGGTTGACTACCACTCTCATCATGCCAGGGACTACAGCTCCCACCTGAACCAGCCCCATCGCCGCCGGCCCTCCTTACTTTCGGAGTTTCAGCCTGGGAATGAGAGAGGACAAGAGCAGCATATTCGCTATGAGCACATGTACCTGCCAGAggccagcagccaatcagaggtggAGTATGCAGAGATCAAACGGCCTCGTTTAGAGATGGGACCAGAGTCTATGATGAGGCCTTCATCCCACCGGCCACAATTGCCTATGGGAGGGTCTGAGGATATGGGAAAGGAGCGTGGAAGTGGAATGGGGAAGCTGGAGCCAATCTCCCCCGTGAGCCCGGTCCACATGGACCCTGACTTGGATCTGGTGCCGGCTCGCTTCTCCAAGGAGGAGCTGATCCAGAACATGGACCGCGTGGACAGGGAGATCACCATGGTGGAGCAGCAGATCTGCAAGCTTCGCAAGAAACAGcaaCAGCTAGAGGAGGAGGCTGCAAAGCCACACGAGCCAGAGCGGCCCATCTCACCGCCACCCAGCGAGGCCAAGCACCGCAGCCTGGTGCAGATCATCTACGATGAGAACAGGAAAAAGGCAGAAGAAGCTCACCGGATACTGGAGGGACTGGGACCCAGGGTAGAGCTGCCTCTGTACAATCAGCCTTCTGATACCAAGCAGTACCATGAGAACATCAAAATAAACCAGGCGATGAGGAAGAAGCTCATCTTATACTTCAAGAGGAGAAATCATGCTCGTAAGCAGTGGGAACAGAAATTTTGCCAGCGCTATGACCAGCTGATGGAAGCCTGGGAGAAGAAGGTGGAGCGCATCGAAAGCAACCCACGGCGCCGAGCCAAGGAGAGCAAGGTGCGGGAGTACTACGAGAAACAGTTCCCAGAGATCCGCAAGCAAAGAGAGCTGCAGGAGCGCATGCAGAGCCGTGTTGGGCAGAGAGGAGGTGGGCTGACCTCTTCTGCAGCTCGCAGTGAACATGAGGTCTCCGAGATCATTGATGGAATATCAGAGCACGAGAACACGGAGAAGCAAATGCGGCAGCTGGCGGTCATCCCTCCTATGCTGTTTGATGCTGAGCAGCAACGCATCAAGTTCATCAACATGAATGGATTGATGGATGACCCCATGAAGGTGTACAAGGACCGGCAGGTTATGAACATGTGGAGCGAGCAGGAGAAGGACACTTTCAGAGAGAAGTTCATCCAGCACCCCAAAAACTTTGGTCTGATTGCGTCTTTTCTGGAGAGAAAGACGGTGGCGGAGTGTGTGCTCTTTTACTACCTGAccaaaaagaatgaaaactATAAGAACATAGTGCGGAGAAACTACAGACGCAGAGGAAGAAGCCAGCacggccagcagcagcagcagcagcagcagcagcaacagcagcagcaacaacaagtGCACCGGGGCAGCcaggaagagaaggagaaggaggagaaagagaaggaggcagagagggatgaagaaaaaaatgaagctGAAGACAAGGAAGATGGAATGAAGGACGACACCTCTGGAGAAGATGCAGAGGACAAAGAGCCCACTGTGGCTTTCAAGGGTCGACGCACAGCCAACAGCCAGGGGCGCCGCAAGGGCCGCATCACCCGCTCGATGACCAGTGAAGTGGAGGAGACCACCACACTGCCACTCAACAATGAGCTTGctaATCTGGAAATGAATGAGAGCTCTCGCTGGACTGAAGAAGAGATGGAAACTGCCAAAAAAGGCCTTCTCCAGTATGGTAGGAATTGGTCCGCCATCGCCAAGATGGTGGGATCAAAAACAGTGTCACAGTGCAAGAACTTCTACTTCAACTACAAGAAGAGGCAGAAACTGGATGAGATTCTGCAGCAGCATAAAATGAAATCGGAGAAGGAGCGAAAGGCCCGCCGTAGGGGCAAAGCCCTGCAGAATGAGGAGACCAGTGCCCCGTAtacagcagaggaggaggagatggaaggTTCAGGAGCCAGTGGCAATGAAGAGGAGGCCCCTGAAGATGGAGAAGGTGGAGCCAACAACAGCTCTGACACAGAGAGCTTGCCCTCGCCACACTCATCAGAGGACAGCAAGGCTAAGGAGGAAGGCTCGGGCAGGTCCAAGGCCAGCTCCACCACCGGGGACAAGGAGGCGTCCGGTTCAGACATTGGCCAGGCAGGGGATGAGAAGCCTCCAGTCAAGGAAGATGGAGAATCGGCCATCAAGCAGGAGATAAAGACTGAGACAGGGGAGCCCAACAAAGAACAGCTGCAGCCAACACCACCCAGCGATGCCATGGATAAAAAACCTTCTACAGCAGAGATGGAGGAAGTCAAAAGCTCCACCAAGAGCTCCAAGAAGCACCATGGGCCCAATGCAGGTTCCCGTGGGGACAGTGACTCTAGTGCCACTTGCAGTGCTGATGAAGTggaggagacagacacagacaaaaacagaatGACTTCTCCACGGCCAAGTCTACTGAACTACGCTCATGACGGAGTCATATCCTCCGCACTGCAGAAGCCCATGGACCTGAAACAGCTCAAACAGAGGGCTGCTGCTATACCACCTATTATGCCAGAAGCCTCAATGCAGGGCAGTCAGCGGAGTGGAGGTGGCAAGGCAGTGCTGCCCCCCCACGCCCTGGCATTGTACCAGCAACAGATCACCATGGCTCATGGGGAGTCCTCTCAGGAGGTCAAAATGCAGCAGcatcaacagcagcagctttcaggcCAGCCAGGCAAACAGCAGCCTTATACCTCGCAGGCAGACCGAGACAGGGAGGCTCTTCACAGCAGCAGTCCTCGTAATCGCCCGCACAGCCCCTCCACCAGCGACAAGGATGAAAGGTCCCGGGCTTTCTCGCCGCAAGGTGAAGCCAAGAAGCAGGCACTGGGCCCTGATGACCTGAGGACCTCCAACTTGGGTCGACCAGTGCTGTCCCGCTACCCCATGTCCCCGCGAGACATGGCCAAGATCAGTCACGACCAGCATCTGCTCCACTTCAACTCGTTCCAGCAAACAGGCCACCCCTCACTCCCTAATCTGCCACAGGACAGTGGGAGGCTAGCAGCAGTGAGGCCCCTCACCATGCCAGAGCCTCCGCCACTCATTTCCTCCACCAAGCCAGGAGGCTCCATCACACAGGGCACCCCAGTGCAGTTGCACAGCCCAGCTCATGGGTTGGACCATGGGAAGATGACCCCCACACAGATGGGGTTGTCCTGGATGGATCAGAGGAAAGTGGCAGGTCCTTTCCCCGTGATAAAGCAGGAACAGTTGTCACCTCGCAGCTTGTCCTCTCAAGCTGACAACATGTCAACCCAGGGCTCGCCTCACGATAGTGCTGCTGGACGTGGTTCTATTCCGGCTGTTCAGGGGGGAAGTATCACTAAAGGCATCCCAGGGACCAGAATGCATCCAGATTCCTCAGTCTCCTACCGAGGGGGCTCCATTACTCAGGGGACACCGGCTGATGTGCTTTATAAGGGAACCATAACCCGCCTGATCACAGAGGACAGCGCCAGCCGTGCTGAGAGGGAACGGGATGAGGCCCTGTCTAAAGGCCATGTGGTCTATGAGGGCATAAGTGGGCACATTCTCACATATGACCGCCCGCCTTCTCAGCCCCCTAAAGATGAGGGCCGAGGCCCCGGGCAGTCTGGGGAAATTCTAGGCCTGAAGCGTCCTTATGACATTATGGAGGGAGGCATCTCTAGAGGACTGCCTATGAGGGATTCACTGTCTGCTGCCAACTGTGAAGgtCTGATTGGTCGAGCCATGCCTCATGATAGGGACAGTCCGCACCACACACCTTACAAGGATGCTCATCATATCCGTGGTTCCATCTCACAAGGTATACCTCGTCATCTGGACCCTCAGGATGGCTACCTGAGGAGAGAGGCTAAGCAGATGAAGAGAGAGGGCTCCCCACCCCGTGGGCCTGGTTCACTTTCCGACCCAATGAAGGGCAGAGAGGCCATGGTGCCTACAGTGAAGGAGGCTGGGCGCTCCATCCACCTCATTCCCAGAGAGGAGCTGAGACAGCCTACCAAGGAGGGCATCATAGCACAGGGAACACCCATGAAGCAGGAGGCAGCTGCTTCAGGGAAACGTCATGATGTCCGCTCCATCATAGCCAGTTCACCACGTTCCTACCACAATGCACCCTCCCACCTGGAGATGCGTGCTGAGAGGGGCCGCTACGAAGAGGCACCAAAAGGGCGGCCCAGCGCAGTGGTCAGTACGGCTAGTACGATTGCCCGCTCTTCTCCGCTTACACTGGGGTCAGACCAGGGAAGCAAGACCCATCATAGTCCAGTGGGCTACGAGGACAAGGGTGCCTTAAGGGCCCCTTACCCTGGGCCTTCGCACCGCGGCTCCCCTCTGTCCAGGGAGGCAAGCCAAAGGCAGCATGACGGTTCCAGTAAGAATCCGCCTCAGGAGCGCAAAGCCACACCAACCCCCAGGGAAATGAGTGCCACCAAATCACCACTCCAAGGTGTTCCAGATCAACAGACCTATGAGCGTCTGCTGCAGGGTCTTGGGGCTGCAGATGTTTACCGTCAAATCCCCATAGCCTTTGATCCTGCGTCGCTGCCCCGTGGCATCCCCATTGACCCAGCGGCCTACTACTTGCCTCGTCACCTAGCGCCCAACCCGGCCTACCCTCATCCCTACCCCTACCTCATCCGAAGCTTTCCTGACACTGCAGCCCTGGAGAACCGCCAGACGCTGCTCAATGACTACATCACCTCCCAGCAGATGCATCAGTGGCCTGCAGCTGCTGCCATGGCCGCCCAGCGCTCAGACCTGCTGAGGGGCCTTGCTCCACGAGACCAGCCCCTTCCTCTGCCCTACTCTGCAGCCCCACGCGGGACAGCCGGCTCCCCAATGGATCGCATCACCTACATTCCCGGGGGGACCACCACCTTCCCTGGCAGGCCTTACACCACCTCCCCCATCTCACCTGTTGGATCTTCGCACATAAACAAGATGCAAGGCGCATCTTCAGAGCGTGAGCGTGAAAGAGACCGAGAAcgtgacagagagagggagagggatcgggagagagacagagaacgagagagagagagggagcgtgAACgcgaccgagagagagagagagagagagaccgtgAAAGGGAAAGGGAccgggacagagagagagacagagaccgaGAGCGTGACCGAGAGAAGGGCGCGTCTCTTGGAAATGTGGAGCACGCCCCAATCTGGCGACCAGGTACAGAGCACAGCTTggcaagcagcagcagcagtgtgagaCCTTCCTCCCAAACATATAGCCACCAGCACTCCCCAGTGTCTCCTCGCACCCAGGAGAATGTGCAGCAGAGGCCAAGTGTTCTGCACAACACTGGGGGCAAGAGTCTTTCTGTCAGCGATCACTCCAGCCCATCTGTGTTTCGGTCCATGTCCTCTGGGCCAGCTCGCTACCAAGGTTACCCTGGCCACCTCCAAAGGACAGGTGTGCCCCCTGAGGCCTACCCACCTGCCATGGACTCAAGTGGAGCCAAAGAGCAGAGTCGCGATGGAGGCAAAGCCAGAGGTGGTTTACCTAAGCATGTGCAGGACCAGCACGGGCCCTCCAGTAAATCTGACCCCAAGCTGTCCTGCCCCAGCCCAGGAGGAATGTACCCAGGTTCCTATCCCTCGGCTTCAGGCCGGTCCCAGCACCTGCTGCCTCCCCAATCGGATAACCCTCCTGGCCGTGGAGAAAGCGGTACACCTAGTAGGGAAAAGACTCAAAACAAACCGATGTCCATTCAGGAACAAGAGCTCCGAGCACTCGGTAAGACCACAATGACTGCGGCCAACTTCATAAACGCGATTATTATGCGTCAAATTTCTTGTGAAACGGGGATGGCAGAGACGGGCTCGCTTGTTGCCAGCTGCGCCACTGATGCTCAGCAGAAGATGGAGCCACACGGTCTGTACCGTCCTCCGTCTGAGGAGAGACTGTCTCCAGGCCAACAGCCCCCGTCCCCCTGTGTTAAAGGCAGCCAGAGGGTGGTCACCCTGGCACAGCACATCAGTGAGGTGATAACTAAAGACTACACCAGGCAGAGCCAGCAGCAGCAAAGCTACCACGGCTCACCTGTCCTGGATTTGACCCGTCCACCCAGTGCCTCCAAGCCCCCACCCACCTCACAGGACTCTGCCCAAGGGTCCCGATATCCAGAGGGCCTTGGTGGAGAACGCAACAGAGACCGGTCTCCTCCTCAGCCCAAGACATCACCTGTTAGTGTTTCAAATGATGGCATTGAACCAGTGTCTCCTGCTGGAGCCAGCTCTGAGCCTGAGGTCCAGGGAGGGGCCTCCTACTCCAACGAACAGGGAGAGCAAGGAATGGGCTCCCGTTCCCCTCCCAATACCTCCCAGCCTCCAGCTTTCTTCAGCAAGTTGACTGAGAGCACCTCAGCTATTGTGAAGTCAAAGAAACAGGAGATGATCAAGAAGATGACTGTGGTGGGAAATGAGGTTGATTTCAATGCTGGTCAGCCAGGAACCGAGATCTTCAATATGCCGGCATCTACGAATGCAGTACCTATGAATGTCCGCTGCCACCCAGCTCCAGAGACACCTGGTAACTCAATAGGCCTGGAGGCCATTATAAGAAAGGCCTTAATGGGCAAATACGATGATCAGTCGGAggaacgctctccatccaacgcTGCTAACCAGATGCCTGTAGCCGACGGACGTGTTGAAGACTTTTTCTCACAAGGTGGGGGAAAGTCCTCAAAGGGCAGCGGGCGCTCTAATGGGCGCAAGGCCAAATCTCCAGGACCAGGCCTGTCAGGGGGGGAGAGGCCATCCTCTGTGTCCTCGGTCCACTCTGAGGGAGACTGCAACAGACGAACTCCTCTTACCAACCGTGTCTGGGAGGATCGGCCTTCATCCACAGgttcaactccgactCCCTTCCCGTGTAACCCCTTGATAATGCGTTTCCCTAGCGGGACGGTGTCCGCTCCCTCACCCTCCTCTGGCCAGCCGGGGGGCCAGGGCACTGGGCCGGCGCCTGGACAGGGCCGGTCGTGGGAGGAAGAGCCCAAGCCTCTGCTCATGTCTCAGTACGAGACCCTGTCTGACAGCGAGTGACCCGGAAATCGATCGTACCACCACACCCGCTAACCAACTCTGTGCTgctgcagccacacacacacacacacacacacacacacccacacacacacacacacacacctgctaaCCTACCCCCACACCATTCCACTCTGCATTTCCTCCATCTGTCGTCAAAGCAAGGATCGTGTTCTTCTCCTTTCACACACCTGAGATGCCAAGCAGCAACGAGCTGAGACACTGCTGCTccgtgtgttagtgtgtgtgtgtgtttgtgtgtttgcacttAACGTGGTATGCATTCACTCCAGGACTACTCTAAAGgacaaatcactttttctttttttttagtttactaCTTTTCCCTCACTGGCCTTATCAATATAGACACATTGACCTGCACCTTTTGGGTGCACCGCTCTGATGTGCTGACACTTGTGTGGAAGGGACtcggggtggtggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78455 lncRNA upstream 76303 1701907 ~ 1728333 (+) True G58347
TU78361 lncRNA upstream 242116 1476674 ~ 1562520 (+) True G58286
TU78366 lncRNA upstream 242116 1476674 ~ 1562520 (+) False G58286
TU78338 lncRNA upstream 447387 1356850 ~ 1357249 (+) True G58269
TU78326 lncRNA upstream 470753 1333501 ~ 1333883 (+) True G58260
TU78506 lncRNA downstream 113359 2062074 ~ 2062569 (+) True G58383
TU78505 lncRNA downstream 113386 2062101 ~ 2062569 (+) False G58383
TU78509 lncRNA downstream 113905 2062620 ~ 2062956 (+) True G58384
TU78508 lncRNA downstream 113976 2062691 ~ 2062956 (+) False G58384
TU78510 lncRNA downstream 113976 2062691 ~ 2063002 (+) False G58384
XM_039803066.1 mRNA upstream 32963 1736678 ~ 1771673 (+) False ep400
XM_039804564.1 mRNA downstream 88857 2037572 ~ 2054481 (+) True ccdc92
XM_039804565.1 mRNA downstream 91824 2040539 ~ 2054481 (+) False ccdc92
XM_039803640.1 mRNA downstream 191382 2140097 ~ 2156589 (+) True kctd9a
XM_039803644.1 mRNA downstream 208897 2157612 ~ 2160627 (+) True LOC120560792
XM_039804148.1 mRNA downstream 244197 2192912 ~ 2203066 (+) True klhl22
TU78000 other upstream 1592266 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 929686 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2168564 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 2475426 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 2483456 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 2483953 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile