RNA id: XM_039804629.1


Basic Information

Item Value
RNA id XM_039804629.1
length 3120
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120561470
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11837758 ~ 11848140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGATTTCTTCCTTTCTTGATCGGGACCAGAGTTCCTTCAAACGAACCAGCCTGGCAAGTCCTCTGTGAATTAAAGGACATTGTAGAACTGGTTGTTGCACCTTTTCACACGGAGGACTCTATTTGTTATCTTGACTTCAAGATATCTGAACACAGGACAGTATTCCAAGAAGTTTTCCCTGATCAAAGAATTCGGCCCAAACATCATTACTTGGAGCATTATCCAGGGTTAATACGCCAGTTCGGACCCCTTGTTGCACTATGGACTATGAGATTTGAAGCAAAACATAGCTTCTTTAAAAGAGTAATTCGTCATACAAACTGTTacaaaaatgtactgtattcaTTAGCTCAAAGGCACCAATTTCAGACTGCATATAATCTGCACATGTGTAGATTTTTTAAGCCCTCTTTGGAGGTTTCTGATGTTTCAACACTTCCCCTTGATGTTATTAATGAGGACATTGCATTGGCAGTAAAGCAAAGACATCAACACATGGACACTGTGAACCTTGCAAGAAGTGCAACCTATGACGGCTTCAACTACAAGATTGGAATGGTGGTAGCCCATGGGTCGCTGGCTGGACTTCCAGAGTTCTGGGAAATAGTTCATATGATTGTTCTACAGGAGAGACTCATTTTCATTGTCAAAAAATGGGATGCCTGGTACCTGGAACATTACAGAGCTTATGACTTAGTCATATCTACTGCTAGGGAACTAAGTCTTGTTGGGGTGCATGAACTGACAGATCCCTACCCTCTGGCTCACTACATGGTTGATGGACGGCGCCTCATCTCTCTGAAGagatacatacatgcataagATTCTTTTCAATGGGCTGACATGGCAGTGAAAAGGCCAGCCAAGTTGCGGGTTGTTTTGAATCCTGATGACACCAGGAAGCTAATTCTGCCTGATGGAATTCCAGAGACAATGGAGCAGCTTATGGATGAAGTCCGGAAAGTGTGTGGGTTTAATGGTAATTTCAGACTGCAGTACCAAGACAGAGACTTTGGAGATGCGCTAGTGAACTTGACATCTACTGTTGAACTTGAGGACTTGGCAACTGTCAAGGTCATCCCAATAATTGATGATTGCAGCCAAGGACTTAATCTTACTGTCTGTGATGATTTGTCAACTCAATCAGATGACACAGAGCTCCTTTCCACACCCTCCAGCTCTGTCTCTACAAGAACTCAGATGTGGCCAAGAGAGTTTCCGATACCAACGTTCTCCTATGACACTGAACTGCAGTTAGAGAAGGGGAATGTGGTGTATAGGTCAAACATGACAAGGTTGACACCTAgttcaaaaacaaaatctgatATTCTGGAAAAGGTAGCTGAGGAGATATTCAAGTACAAGGCCTACCCAACAGATTCTGACTTCAGTGATGTTGCCGAAGCACTTATCAAGAAGCATCCATGTCTCTCTGAACCTGGTTCATACAACGGTTGTTACGGGTGGAAGCAGCGGTTGAAGACCAAAATGGGCAACTACCGAACTCAGTTGAAGGGCATTGGGTGTTCTGAATTACTTGCAAATTCACTTAAGTCCAAAGCTCCAGAGGATGCATTGCCAGCAAAAAAAGTAAAGAGACCTAAGAGAGGAGAGGCCAACCACATACCTGACATTCCAACTGGAGAGACCCCAGACAAGTTGGAAAAGGAGAGACTGTTACTTCTAAGTGAGGTGATGAAACGAAACAACCGTGCACTGATAAAGGACAAAATGGCCAAGACGTTTTCACTGCGGAGGCATGAAATTGTGGAGAAGGAATTAGGAGTGGAGGAGTTAAAAGTCAGATGGCCCGCATTGTTCTCAATGGATGAGatcaatGCTGAATTCATGAGGATTACAACTGTTCCTCTTCAACCGCGGTTCCTGGCTTCCTTGGACAAGCACCACAGCAAGCTGATTGATATCATCAGAAACAAGGGAGGAACTGTCAGAGAGAAGACCCGGAACATACTGAGAGTTTTGGAtcagAGTCTTGAGGTAAATCTAAAGAGGGAGTGCCTGCTGAAGTCTCTTATTGTGTACCTTGGGGAGGATGTGGACAAACTTATCAAGGAATATCTGGTTGTTCAGAAGGACCAAGGTGAAACAGAGCTCGAGAGGTGTACAATGGCAGTGTTTGTTataagggaggaggaggatccTCTCCAGCCACCACAGGACGTTGGGGTTGTAATAGAAGGTGTGGAAGTCCTTAACAAGCTGCCATCAGTTACACATGCATGTGCCATGTTATTTGGCCTCATCTACGCTCTAAACTTGAGCTATCCAGGTGAGCTCAAATACACTTTTGATGCGCTGCAGAAAATCTTCATGGAGATTGAACCAAAGACAATGAGACGCAGAGTGTGCAGTCTGAGTGTCAAGCTCTAAATAATGGATTATTCGAAGAAACATTTGGATGCAGCATGTTTTTGTTCTGTGTTCTAGCTTGTATTCAAACACCTAGCAAGAGAATGAAAGGGGTCATTGTTAAATGTAAATAAGAGACACATACTTCAATTGAACAGCCTTACTTTAAGAATTTCTTTTTACAGAATTCTAATTTTTTTGTGGAAACCCATGTCTGGTAACACTGTCAGAGTGTGGTTAGGGTTAAGTGGTTAAGTTGAACAAATTGAGAGATAAAAAATTTGTTCTGTAAACGGTGAATGAAAAAGTAGACTTGCATGGAAAACATCACTGTGTGGTGAGTGTTAATTTCTAAAATGTCTTCTGGTACAAAAGACAAAATGATTGCAATCTGTTTTCAAGTGTCAGAAGCCTTGTTGGGTTTTAGAGAATAGTAAAAGCTAATGTGGACAGTGGTAATATGCAGCTATTATAAGAACATGACTGCTGCTGTTCATAGTTTGCACCCCCAGCATGTGaactgtattttctcttttttttggtcTCTTGTTACATTTGTAATAGTTCAAAATGATGTGACATTCAAACATTATAGTCCTTTTTATAGATGGATTGCCACGTTTTAGCACGGTTAGAAAGTATttttactagggttgggcatcatttggattttaacgattctgattcagattcttcctttcgattctggttcttatcgattctcaattccgattctttaagggtggagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81608 lncRNA upstream 45353 11795981 ~ 11796327 (+) True G60864
TU81558 lncRNA upstream 237244 11603778 ~ 11604436 (+) True G60822
TU81557 lncRNA upstream 238069 11603180 ~ 11603611 (+) True G60821
TU81498 lncRNA upstream 297021 11488366 ~ 11544659 (+) True G60780
TU81626 lncRNA downstream 20485 11868625 ~ 11873116 (+) True G60876
XR_005639416.1 lncRNA downstream 25352 11873492 ~ 11876959 (+) True LOC120560076
XR_005639417.1 lncRNA downstream 28833 11876973 ~ 11880769 (+) True LOC120560077
TU81641 lncRNA downstream 49953 11898093 ~ 11898916 (+) True G60891
TU81642 lncRNA downstream 51583 11899723 ~ 11899950 (+) True G60892
XM_039803776.1 mRNA upstream 51051 11728462 ~ 11790629 (+) True stxbp1b
XM_039803777.1 mRNA upstream 52923 11730594 ~ 11788757 (+) False stxbp1b
XM_039804287.1 mRNA upstream 265326 11573980 ~ 11576354 (+) True LOC120561249
XM_039804291.1 mRNA upstream 564196 11275018 ~ 11277484 (+) True ankrd34bb
XM_039804304.1 mRNA upstream 609793 11218951 ~ 11231887 (+) True gtf2h2
XM_039802658.1 mRNA downstream 273285 12121425 ~ 12158698 (+) True dpp7
XM_039804008.1 mRNA downstream 625941 12474081 ~ 12501550 (+) True LOC120561040
XM_039804006.1 mRNA downstream 626033 12474173 ~ 12485766 (+) True LOC120561039
XM_039803770.1 mRNA downstream 892726 12740866 ~ 12748536 (+) True fgf17
XM_039803771.1 mRNA downstream 892726 12740866 ~ 12748536 (+) False fgf17
XR_005639564.1 other upstream 1089240 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 1089240 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 1089240 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 1094732 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1860691 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 78043 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1073007 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1073007 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2259343 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2293302 14141442 ~ 14142050 (+) True G61338

Expression Profile