RNA id: XM_039804631.1


Basic Information

Item Value
RNA id XM_039804631.1
length 3444
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120561471
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15604966 ~ 15612582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAATCAGCGTTAATCAGCATCACTTTCTTCACGTGTGTTAATCTTCAAATACTGCCGGGGACGTGCGCGCCTGCTAGGCCTACTACCCAGTTTCCTCGTTTTTTTCCAGCTATTCAAATGCAGTGTCAAACTTACACACTgcggacagaaagagagaagtcGAGGCCAATAGACGACCACAAAAGTCGAGCAGTTAAACCTGGACTCCAGGAGGGCCTCTCTGTGTGAGAAAACCGGCCTAATGATGATGCAGTGTGGGATGAGAGGGGGCATCAATCACCGGTGATTTTTAACGATTGAGTTTTGAGGCTGTGCCAGGAGCATCTTCATCATCCTCCATGTCTGATGCCTCCAGTTCCTGCTGACCGCTGACAGCTCAACATCCTCCATCTGTTCTTCTGCTTGGAGCTtcactctcttcttctttcactCAATCCTTTCTCCATCCGTCTGTCTATCCACCGGTCATGAATCCCTACAGACACACAAGTCCACCTCCTGACCCTTATGATAATTCCCAAAATCCATCTCTGTCAGCCACCGTACCGTCTCCTCCGCTCATCCAGACAGGTCATAGCTCTGTGACAGTTTTGAGCCAGAACGTGCCTCACTATCTGGCCTCCTCAGACCACGATGGAGGAAACCTGGTCCCATCACCAAACTTGGACCGCTCCGCCTCATTGCTTCCAGGGTCCAGCCTAGTTTCAGTCTCGTCTTTGGCTCAAAGTCCATCTCCAGCTCCCACTCTGAACCCTTACCCTGCCCCCGGCACCCCCCCCTCCTGCCAGGTCTCCGTCATCGTCCCGTCCCCAGACCTCCGCCCGTCTCCCCTGCCGTCTCAGTGCTCCGAGGACACCTGCCCGGACCTGGAGTGCTCAATCTGCTTCAGCCAGTTCAACAACGTCTTCCGCTGTCCCAAGATGCTTCAGTGCAAGCACACCTTCTGCCTGGAGTGCCTGGCACGCATCAACGTCAAGTCGGCCGAGCCAAACTCCATCCAGTGCCCGCTGTGCCGCGGCCTCACGCCCCTGCCCACCCTCGGCCTGCCCAGACTGGCCACAAACTCAGACATGCTGTCCTGCCTGCCGGCCGCCATGCAGAGAGTCTACAGCATCCGCTTCCTGCGCAACAAAGGGAAGCTGCAGGTCAAAAGGTCATCTGAAGGTCAGAGGTCGCTGACATCTCTCAGGTCGATAAACCGTACTCTGGACGTGGGGCTACCCAGCCCGCCTGCCGGGAGCCGCGGCGCCGAAGCGGTCGGCATGGGCGGAGCTCTGTTCCGCCTGACGGGCCGGCCGGCGTGCCGGGCCTTCCTCCTGACGTccgtggtgatgatgatggtgcTGCTGACGGGCATCATCATCTTCCTCCTCACatacaaaagtgaaaaaagtgggTGACATCACATTTCTTCCTCctgctttttattttcagtgGTGGAAAAGGTCACCGAACAGTAGAATTCCGCCATCTGAAATGGAATAAAAAGCCATCGTTTCTGGCTTTTTAACGCTCCAAAGCCAAAAGGACACAAACCTCAACACTCAACTCATGAGCTGAGAAAGTGAGAAGCATAAAGACTTTCCACTCGTAGATTTTATTGTTCAGTCCTTAAAATTGACTCCCAGAATTCAGCTGAGGTTGAAAGGTGTGGTATCTGAGACTGAGAAGCAGTTGCCTTTAATCTGttttacagtgcttaacttgtGCCAAAAGCTTTAAATGATTTGCTAAATGTAGCTGGACATGAGAACCTTCTGCCTAAAGCAACACAATGGCAGTCATGTAACAGCCGAGTTGGAAAGGTGGGAAGCAGTGGCCTTTAATCTTACTTACAGCCCTTACACCCTCAACCTTCGATTACTTTAGGTTTTGGGGGAAAACACACACGATCACCACTTTTTAACGTCTTGAATTTCGTTGAACAAAATGGCTGATCTGATAGTCAAGTCATGGCAGAGAAGATGAGAAATGTAGACGTGCTGTATTATACCGATTGATCGCAGGTTTATTATATTACAAGGTCAAAGTCTCTGGTGGCTCCCATCCAGCTGCAGATAGGTCTAAAATAAACTTTGGACTCCAGGGACTGGAATCTAATTTCACTGTCACTTTGGGACATAAAACACTATTAAATAACAAgtaacgagaaaaaaaaaacaatattacatAAAGCTGTCTCCAGGTGGTGCCACCTTCTTCATATTTAAACTCCTTTTGGCAGCTTTCAGCACTTTAAAGAGAGCCTAGTGACTGAATTGTTACCTGTTAGTTTCTGTGTTGTTCCGTCTTTCTAAGTGGCTGTTATTTACATGAGTCTATTTCCTCCTGTCACTCCTCTGCCCCTCGTAACCAAATGCTGTAAACAGGAACCATGCAAATAAACCGGATTCAGTTACAGTCTGACACAGAGAGCACAGGCTTTCCATAGATGCTGGAACATTATACATGATGGAACTGAATATAGCTGGATAGTGTAACCGAATAGTTGACGCAAATTACAGAAATATTTTTCCACTTCACCTCTAGAGCGGTCTCTCCAATTCGGatagtatttgtttttattcgTCCAGGTTTTCAGATCATTTCTGCCTCCACATTGACACAATGCAGGATGATGGGATTCCATTTGAGGTGCTAAAAGCATCAGAATGCCTTCCCAtaattttagttttcacaatttaAAAAGGTGTCCTTGTAAAACTTTTGTTCCTGTTGATTATCCACAGTAATGGGGACCTTCTGTTGCAGTTTGattcttctttttaaatgtactttctCAAGACTGCAAGCACCACAAAATAAATCCCATCATCCTCAATGTCATTGATGTGGAGGCAGAAATCTGAAAACCTGGACGAATAAAACCAAAACTGTCTGCATGTATTTTGTAGtagtgacttaaaaaaaaaaaaaaaaaaaaggggtaaaGGAGCAAAAAGGTGTCTGTGGTTGAAAGCATGAGGCAGTCATGTACCTGAAGTTTTAAATATTGGGTCAGTATGCCTGTGTTCCGACCTGCAGGAGGCTGTGAGATGTGGGACAGTCCCTGGTCATGTTTTAACTGACCAATCAACAGATCAGTGACCATCAGTTCGCCGCTGAAAATGAAAGGACAGCCCACAAGGAAAACCTTTCCCACAAATTCTTTGACTTGCAAATCAAATGTGTCGTCCCAAAATAACTCATCCATTTACAAAAGCTTATTTACATTTAATGTTTCCATTTTTCAGCCTGCATCCAAGAGGGAAAATGGGTTTTAATCCAATGTTTATCTTCCGGTTTTTGGTCGGTTTctcctgttttgtgtttttaggcTCTGACCTTGTTTTACTgtgcaatgtaaaataaattattttatatatttatgactGTTTTAGCAAAGCTTGCTCTATCACTGTTTGCCTTGTGTTGAACTTAAATAAATTCCTTTTTGaattatg

Function

GO: NA

KEGG:

id description
ko00590 Arachidonic acid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82871 lncRNA upstream 31993 15532867 ~ 15572973 (+) True G61867
XR_005639524.1 lncRNA upstream 59489 15540869 ~ 15545477 (+) True LOC120560848
XR_005639523.1 lncRNA upstream 65122 15539355 ~ 15539844 (+) True LOC120560847
TU82867 lncRNA upstream 72170 15532108 ~ 15532796 (+) False LOC120560526
TU82761 lncRNA upstream 228964 15374777 ~ 15376002 (+) True G61782
TU82947 lncRNA downstream 145008 15757590 ~ 15777141 (+) False mctp1a
TU82990 lncRNA downstream 331158 15943740 ~ 15961114 (+) False fam172a
TU82991 lncRNA downstream 349019 15961601 ~ 16045838 (+) True G61966
TU82993 lncRNA downstream 422869 16035451 ~ 16056705 (+) True G61968
TU82995 lncRNA downstream 435801 16048383 ~ 16049879 (+) False G61970
XM_039803730.1 mRNA upstream 41972 15558504 ~ 15562994 (+) True LOC120560850
XM_039803141.1 mRNA upstream 72338 15518780 ~ 15532628 (+) True LOC120560526
XM_039803140.1 mRNA upstream 84561 15508922 ~ 15520405 (+) True LOC120560525
XM_039803725.1 mRNA upstream 137558 15435741 ~ 15467408 (+) True LOC120560844
XM_039803726.1 mRNA upstream 137558 15452053 ~ 15467408 (+) False LOC120560844
XM_039802831.1 mRNA downstream 24216 15636798 ~ 15775516 (+) False mctp1a
XM_039802834.1 mRNA downstream 24216 15636798 ~ 15775516 (+) False mctp1a
XM_039802832.1 mRNA downstream 24216 15636798 ~ 15775516 (+) False mctp1a
XM_039802833.1 mRNA downstream 24217 15636799 ~ 15775516 (+) False mctp1a
XM_039802835.1 mRNA downstream 24217 15636799 ~ 15775516 (+) False mctp1a
XR_005639522.1 other upstream 170523 15431708 ~ 15434443 (+) False zgc:101664
XR_005639607.1 other upstream 306323 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 521518 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 654345 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 810364 14786011 ~ 14794602 (+) False G61514
unassigned_transcript_259 other downstream 5303 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 6162 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 6491 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 150532 15763114 ~ 15777141 (+) True mctp1a
XR_005639530.1 other downstream 855741 16468323 ~ 16475897 (+) False LOC120560890

Expression Profile