RNA id: XM_039804633.1


Basic Information

Item Value
RNA id XM_039804633.1
length 2320
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120561472
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20161997 ~ 20168159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTGTGTTGGGCACGTAATTCTGGTGTGTTTTAAGCGGGGAATCGGTGCATCTTTCCTCGATACTTTTGCTTTGAAAAGTCGACACCGTGTCGATTACTGACGTTACTTCTAGCTTCACAGCTTGTTTTTCCAAAAGGCTTTCCGGTTGCACAGGTTTGAAAGCAAGTTGGAGTAGTATATGGAAGAGCTCTACAATGTGGACAGATAAGCAACGAGGAATCAGAGTTTCTCAGGAGGAGCTTCTCTGCAAGAACGCCTGTGGGTATTATGGAAACCCTGCGTGGCAAGGCTTCTGCTCCAAGTGCTGGAGAGAGAAAGCACGAACAGCTGGAGCCTCGAGGCAAGACACAAGGCCGAGCAATGATGGAACTCCTCTCACCTTCTCCAAATTTGAAGTGAAGAAAAGCACTGAGAAAGGTCGTCGAATTAACACAATGAGAAGACTCTTCTGGGGCAGTCCATCACCTCCTAAACGTCAAGAGTCTTCTGAAAGCCATGCAAATGTGTTGAAAGCTTACCAGAGCCTCGAGCCCGGGGACTTCACTGGTTTCCTGAAGATACTGAAGAGCCCTTCCTCCCAGCGCTTGCAGTCTCGATGTACAGCTTTCCTCAACACAATGGAGGCGTACCATGATCTGCCGGTACAGAAGCTGTCTGATCTTGTGCAGGATTTCTACCAGTCTTTTGCTGAATATTTTAGCGgttttccTGAGGCTCAGGTCACTCAAATAATGGAGCATGTAGAGAAATTAATAATGACACGGTTGCACAAATGGGTTTTCTGCCATGACAGCTGTGATGATGAACAGAAGGATCTGGCTCTCCAGAGAAGGATACGATCTTTGAATTGGATCACCCCGCAGATGCTGAGCGTACCTTTTCCGGATAAAAAGACTGCAGTCACAGCCGACCCGTTTCTGCCTGCTATAACAGCCATAATTGAAATGGATGCCAAACGAGCACCTCAGGATAAACTTGCATGTGTGTCCAAATGCAGTCAGCACGTTTTTGAAGCGCTCTCAACCTCAAACAGTGAGCCCGCTAATGCTGATGACTTCCTGTCAGGCCTGGTGTATGTGGTGCTGAAGGCCAATCCACCTCGCCTACACTCCAACATGCAATATGTGATACGTTTTGGTCTCCCTCACAGTCTGATGGCAGGAGAGAGCGGCTACTATTTCACAAATTTGTCTTGTGCAGTGGCCTTCATTGATAAGCTGGATGGACCAGCACTCAACCTCAGTCCAGAGGAGTTTGAGGGCTACATGCTGCGTCAGCGTGCTCCCCGTGAAGGAAAGAGGCAGCAGGTTGCCAGTGACGCACAACATCTGTTAGAGGAGCTAACAGGCAGACAGGAGAAGCTGGACCAAGGGATGGATGCTCTCAACATGCAGCTACAGACGTGGGTCAAAGCTGTTCATTCACAACTGGATGAGGCAACAGCCCAGTTTGCTCTAGTACAAAAGGAGATAACCGCTCAGGCTGAAATCTCACAGGTTTTTTCATCCTCATCTCATGATGCATCACCGCAAGGGGACGAGAAAGACGAGTCAGTGCTGGCCTTTACGGATCAACATGCAGGTCCACAAGCTACAGACTGTTAGCTATATCAAGAAAAACACCTAATCTGGTACTTGTCTCTTTTAAATCATCAGCACTAACTTATGTAGGCTGCAAAACAAAGATTTATATTTCTAATGTTACACTTGCACACGTTCCGATCACAGAAAGCTTGGTAAGCTGTTGAACATGAAGGAAAACTTCTTGAAGGAAACTTTTTTCATTTGGTATAACAGGGCAcacagagttttttttaatgactttgatGAAGATTTGCCCTTGTATCCTGTTTGAGGATGAAGGCCATTAGAAATACATTCCAATTTATGGAAACAGATGTGATTAAAATTTATATTTAAGCACTCAGGGGACACATCACTTGGAGACATCACCTAACACTTCAAGAGTGCTTATTGAATATTCACTATTTTTTACTAACAGTGTATTAATAATGTGCCTTCATGTAGACTGCtgtgaaataaagaaatatgcTACAGGAGAAAATGTTAGATGGTACTTGTAGACAACTACAAATCAGGGGGTGTATTTAGGAGCTGTGGAACTGTTCCCAACAACTGCCTAGAAGGTGAAATAGCTGGTGCAAAAACAATTTGTAACACATTTTGCCTTCTGTGTTAGTGTGCAGAAGGTATGCATGTTTCCaactgttaaaatgtttttgaagaATTTATAGGGTTTTATGTTATGATCAATTATTGTATCCAATATTATATTAAAGTAAACTTGTATGatttca

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 134831 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 135242 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 136249 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 143585 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 145336 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 224248 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 273552 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 273995 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 390181 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 397509 20565668 ~ 20566142 (+) True G63451
XM_039803897.1 mRNA upstream 52013 20083913 ~ 20109984 (+) False clip1a
XM_039803894.1 mRNA upstream 52013 20083914 ~ 20109984 (+) True clip1a
XM_039803898.1 mRNA upstream 52013 20083914 ~ 20109984 (+) False clip1a
XM_039803899.1 mRNA upstream 52013 20083914 ~ 20109984 (+) False clip1a
XM_039803903.1 mRNA upstream 52013 20083914 ~ 20109984 (+) False clip1a
XM_039804640.1 mRNA downstream 561 20168720 ~ 20172092 (+) True psmd9
XM_039804635.1 mRNA downstream 13025 20181184 ~ 20191466 (+) False LOC120561473
XM_039804637.1 mRNA downstream 13025 20181184 ~ 20191466 (+) False LOC120561473
XM_039804636.1 mRNA downstream 13558 20181717 ~ 20191466 (+) True LOC120561473
XM_039804634.1 mRNA downstream 14248 20182407 ~ 20191466 (+) False LOC120561473
TU84360 other upstream 713047 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1480836 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1742407 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1745991 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1830767 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 309653 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 309653 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 508258 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1420717 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2761740 22929899 ~ 22930205 (+) True G63905

Expression Profile