RNA id: XM_039804637.1


Basic Information

Item Value
RNA id XM_039804637.1
length 6358
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC120561473
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20181184 ~ 20191466 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGAGGGATTATCTCTCGTTCATGATGAATTGAGCGTAATTTGACCGGCTGTCCTTTTTGAAGTTCTGCATTAAAATCAGATACAATTTCGTACCATAATATGTGTATGCCAATCCGGCCTGGACATGAGTTGCGCtcacccatagacagtatatgcgCTCATCCACAGCGGGAAAAGAAGTCGCCCGTTTTCGTAGCTATGGAGATCTACTTTGTGTACGGAAATAGTGATACTACTCACGCAAGCAACTTTGTGAAAAATTAATGCATTTCGTCAGGTCGGTTTACTCGTTCAGATGTCGTGTCTACCTATTGCCTTGTTGCTAAAAAGTCTGGAGTGATACAGGTTTACTTCAGTGGGTGTTCATCGTGCAGCACACCTTTCAGCGCTGACCATAGAGGACTATGCTGTCCTGGGAATCCACTCTATGGAGGACAGGACTCGGCTCTTCCACCTGGTCCAAATGGTCAAAACTCTTGACCTTGAATATGAAGATAGTAATGATGATGATTCTAATGGTGGTGATGCTGTAGGCTATGCTGTCGCAGATAGTAGCTTTACTTATGATGGTTGTGGAGATCCTGGTGAAGATGTatatgatgatgaggatgagaaGGGTGCTGCTGTGAGTAAACTAAATGCAACAAGTTTTTCCAAACCATCATGTGTTCGCAGACGGCTTGATTTCAGTTCTGAAACCATTGATCATCATCTGAAGCTATCTTCTCGACCAGAAGGCACTGTTCATGTCAACACAAGTCATAATAGAAAGAATGTACCAGGCCAGGGCAAAGGATCAGCCATACCTGTGCAGCTTGACACTGAAAGTGCTGTGGTATGTGCCTGCAAAGAAAAGAACAACCACAGGCCAAATGTCCATAGTCATCAATCTGATCATCACACAGAAGCAAACACAATGGGAGGAAATGCCATGTACAACTCTCACACCAGATTATCACCAAAGTGTGTATCATTTCAAAAACCAAAACCCAGGGCTGCAACAGCGGCATCAGATAGGTTTAGCAGCAAACCAGTTGGGCAGAAAGATAGTAACGGGGCTACTGAACACAAGACTAAGCCAACGCCTGTTTATGAATCAAAAAGAACAGCTGGCTACAACTACGGACTACCACTGAGTTCCCCTCCTGCTCCAAACAAAAAgcaACCAGGGGGGCAGcggatcagtgtgtgtgtgaggaaaaGACCTCTGACACGCACAGAGTGCAGGGAAGGAGCGTCAGATGTTGTGACAACTCCGGGTGGAGAGTGTGTGATTGTCCACGAAAACAAAGAGGCTGTGGATCTCACACAGTACATACTACAGCACAGGTTCTACTTTGACCAGGTGTTTGGGGAGGATAGCTCCAACGAAGAGGTGTATCGAAGAACAGCATATCCTCTGGTGCAGCACATGCTCAATGGAGGCAAGGCCACCTGCTTTGCATATGGCCAGACAGGTGCAGGGAAGACTCACACCATGTTGGGTTCTCCTGTCAGACCAGGGTTGTATGCACTGGCAGTCCGGGACATTTTTGCTCACCTCTCCTCCACTCACATGCGCTCACCCTTCCTGGTTTATGTCAGTTTCTTTGAAATCTACTGTGGTCAGCTGTATGACCTGTTGGACCATagagaaagGTTGTTTGCCAGGGAAGATGGACAGAAGGTGGTTCACATTGTTGGGCTGCGTGATGTCAGAGTGGACTCAGTCAGCTCACTGTTGGAGGTGATTTCACAGGGTACAGAGGAGCGCACACAAGGGATGAGTGGAGTGAATTCACTCTCCTCTCGTTCCCATGCCTTGCTTCAGATTCAGCTAAGAGATACAAACCAGCAGATTGCTGGAAGaATGTGGTTTGTTGACCTGGCAGGAAGTGAGAGGGCATCAGATACCAAAGAACCAGACAGGCAGAGTCGCATGGAGGGAGCTGAGATCAACCAGAGCCTGTTAGCTcttAAAGAATGTATCCGGTCGCTTGATCAAGAGCAGTCGCACACACCTTTCAGACAAAGCAAACTTACTCAGGTTTTGAAAGACTCATTTGTTGGTGACTCAATGACATGCATGATTGCCAACATTTCACCTGGTCACTTTGCAACTGAACACACACTAAATACACTGAGATACGCCGACCGGGTAAAAGAGTTGAGGGGACAGGGAGGActaagaggaggaagaaggggcAAGACAGTACCCTCCCCCAAACGTAACCTgtccaacagcagcagcagcaacagcagcagcagcaacagcagcagcagcagcggcggcggcAGAGTCAACAATGTTGGCACCCGAGGGAAAAGTCCCCCTAAAAAGCCAAAGTTagggagacaaagagaggaTTTTGGCCCCACCATGCCTTCCACAAGATTGGCTACGGGGTGCGCAATTTTCTGCTCCACACCCAAAAACAGCAGACGGGGAGAGAAAACAAGTGCAAGAGCAGGAAAGGGGATTGGACTTGAACACATTACACCACTCAGAGGTTTGCTGGGAATGGGTGataagagggagaggagggagagaggaaatggCAGGGAAGGTAGAAGAAGAGAAAGGTATGGAGTAACAGACAGTGTAGGCCACTCAGTTAGTGACCAAAACATTGTGGCAGGGCTGGTCTTGGGACAAGCAACAGATGAGCAGCTTCACTTGTGGAAGGTACAGAGGGAATCTGGATTCTaccacagagaaaaagagaacccgcaaagcactttaaaagggggaggaaaggaggaaaaaagatggaaagaacagagaagacaaGTGGAAAGCAGTAGAGTCACATGCAGTGAAGTAGAAAGGCTAAGGGAAAGAGAATTACAAAAGGATGATGAAAGGGACACGGAGAGGGAGAGGCATCTGAGACAGTATcaccagcagctgcagcagtttATGCCCTCATCAGTTTCTTCCTCTGTCCATCTCTTCTCACCCTCTACTTGTACGTCTTCCTCTAATCaagcctctctctcttcttctgtctctccatctttctgttCTTCTCTCCAACACTCTTCCCTTATGTATCATGGTTTGGAAGAGGTTTTAGATGCGTACCGAGCCAGGGTTGAGGTTAGTACAGATGGTAACAGAGGACAGTCGTCTTTCTTCCCCAGTGGAAAGATTTGCTTACAAACTGAAACCTCTCCAAGCTGCAATAAAAATAAGGATGAAGTTGGTTGTGGTGACTCAGGTAGCTGTGGTGAAGATTGGAGGGTATCTAGGGAGGGAACAGAGGCAAGATTTGGACAAGACAGGGGTAATCGTGAAAAGAGGAGGTCACTGAAGTCAAcaggagaaggaaagagaagagTAAGGAGGGAATGGAGGGAGTGGAGGCCAGCTGGGATGGAGGAAGGAGAAGACAGGAGGTGGGCTTGGGTAGCAACAACAGAGACAGAGCAGGCAGACAGGATGACAGGTGCAATGCCAGCTGATGTAGATGCCTTAGTTTCTTACAACTGTGACTCAGAAGGGAGGAGAGAAGTGGGTGAGGAAGGACTAGATGCCTCAGATGCCCCAGCTGATGGGATGTGGGGTACTGAGGAGCGAGAAGGAGCTGACAGCTATGGCTTACTGTCTACCCACAGCGCTATTGACAGAAACAGCCTCTTTAACCACCCTCCTGTTGAGTCATCCCATCAACAAGCTCCAGCAGAACGACCCCTCTCCCCAGCTTGTGGACAGAACGCACTCCTAATCCCTAATAAATTCAGTGATTTTTCCCTTAAGTTAAAACATACCAGATGTACCTCAAACATCCTGCCTCTACCATTGCAAAATGCTCAACAGGGAGTGCCATCAAGCAGCTGTAGAGAGAAACAACCTTGGTTTGCTGCTCATGCCAATACAACGGAAATGTCAAATGCTCAATCGGCCACACTACCTGTCACTAGTCCCATCACAAAGAATGGATGTAAAATACCAGCTGATCCCCTTAACATATCTAAAAGTCCAGCTTACACTACGATACACAACCATCCAAAGGCCAAAGCCAAAATGTCTGTTTTACCTCAAGAACAGACTGCAGATTCTCTCAGCTACATCATGGACCCCCTCACCATCTCCTTGCTTGAAGTGAACGAGCAAGTCGCCACAGCCTTGTTCCTCAAAGGGGAAAAGAACAACACCTCACACTGTCCGCTTGAGAATGAAAGAGCAGACGATGACAGAAGGGAAATGGAAAAAGAGTGTCTCACATGTGCAGAGATGGCAGGGAAAGTTGTAGCAGACAAAGACGTAGAATTACGCCTGTCTCTTTTGGAGCTGCCACAAGCAAAGACTCACTGCCCTCCCACCCCTGACATCATAACAGCTACAAATTACACTGATCGAAGAAAAGACATGTGTTGTGCCACATATGACCATTTTGGAATAGGTATGATGAAGCCTCCTATCGCTGAGGTTATGCTGGTCTCTCTCCAGGACGAAGAGAACAATCAGAAACCCCAAACTACGCCAGCTATTAAAGTCTTGGGCAGCAGAACGCCTGGATCCCCACTCAATCCCTCTGCATGTGCTTCTGTGCAGACTTCTGTCATACAATCCATCTCATCCTCTGTCCATCAGTGTGGGAACACTGGTTCACCCAGCTCACACAAACTAACAACAAATGGTGCCACCCAAATGCCACCAGAATATGCACACAATATGCATAACAAACTTGCTTTTTCCATTTCATCAACACAGTCAGAAAGTGTTTTGGGCCAGTTAAACACAGTGCAAAAGCCGTGTCACACAGTACATATAAACCATTTCAGCAACTCAAACATCTCACTCCAACCAAACGGTCCTATAGAATCAAATATTCAAGTGAGCACCAGCAATCAGCAAATAAGACCCATAATCCATCTGTCAACGCCGAAAGACTTGGATCATGGCCAATGGTGTATTGTCCAGGCCCATTGGGAGCAGCTTGAAGAGATGGAAGCTTTATGTCGTAAAGAGGGGACGCTTCTGTGCCAACAACCTGATATGGCATTTACAGAATATGTCAACAAGCTGGAGGATATCATGGAGAGAAAGGCTCGGTGTGTTCACAGCATGATAGCTCAGTTGCAGCCATATCTTAAGCCCAGTCATTCTAACCAACCGCACAACCAAGAAGAAGATAATCACGGTCCAATTACTTGAGCCTATAGCATGGCATTTACGCAAAGCTGTGctgtttttcactgaaaacactaAATACAGTATGAGTCAATattagtatttattttattttataaatgttcaattgacttaatgtgtgtgttaaaCAAGGGTTTTTGTGGGGAAACCTGCCAtggagacatatatatatatttgaatcagAAGGGAAAAGTATGCTCATTTATAAGTTTGTGCATTCTGCAgattgatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagtttGTTTCTTGTGTGCAGGTGTGGGGTTGTTGTTTCTTCCTAGATCCTCAGTTCTGTATAAATGCTGATTCAGATgaatatagtatatcaaaaatcttttggggcattttaggcctttatttgataggacagctttgccatgaaagggaaagagagagggtgaatgacatgcagtaaagggctgcaggtcggaattgaacatgcagctgctgcagagaggactgagcctctgtacacaGGGCgcgcactctaccaggtgagctacccaggcaccctaATATTATGAAATTCTTACATATTTATTAAGTTAATCTTAGGGTGGAGATGTACTACTGTGGAAACTTGTAGGACTGGTGTTTAAaaaatttattatatatatatatatatttactgtatcttTTCATTTAACCTAATCCAGCAGGGCTGTACTTTTGAAAACCCAGTCTTGGTCCAATCTTGGGAGTTTCTCCTAGTATCAGACTCAAAATAATTTCTCAATTTTGGTCTTGCTTGTTCTTTTCTTGGTCTTAAAAAACTAACATGATCATGAGACATGACCTATTATTAGATTTTCAGTTTCCCTGCTTTGACTATATTTGAtctgattaattaattaatacctACTTAATGAATGACACTAAACCAAAGATGCAAAACTAATTTTTTGCTACCCTACTTAAAACTTGAGCTCATGTTGTCAGCTGAGCTGTTTACTTGGCAGGTGGCAAACTGTTCTAAAACTTGTagtgatttttttaattgtgagatttttgtattttattttttaaagcaatgGTGTCTCAGATGTTGTTGTGCATGTTTATTTggtgtgtttttagtttttagctAAGTCATTGAGGCTATTTGTTCTTTGAAATAGTTCTAAGAGTTTAAGATTTAATTAAATTGGCTTGATGATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 154018 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 154429 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 155436 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 162772 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 164523 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 200941 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 250245 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 250688 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 366874 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 374202 20565668 ~ 20566142 (+) True G63451
XM_039804640.1 mRNA upstream 9092 20168720 ~ 20172092 (+) True psmd9
XM_039804633.1 mRNA upstream 13025 20161997 ~ 20168159 (+) False LOC120561472
XM_039804632.1 mRNA upstream 13025 20161999 ~ 20168159 (+) True LOC120561472
XM_039803895.1 mRNA upstream 71200 20084600 ~ 20109984 (+) False clip1a
XM_039803902.1 mRNA upstream 71202 20083917 ~ 20109982 (+) False clip1a
XM_039804647.1 mRNA downstream 453 20191919 ~ 20220630 (+) True LOC120561477
XM_039804650.1 mRNA downstream 453 20191919 ~ 20220630 (+) False LOC120561477
XM_039804651.1 mRNA downstream 453 20191919 ~ 20220630 (+) False LOC120561477
XM_039804649.1 mRNA downstream 453 20191919 ~ 20220630 (+) False LOC120561477
XM_039802868.1 mRNA downstream 34854 20226320 ~ 20300395 (+) True pcsk5b
TU84360 other upstream 732234 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1500023 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1761594 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1765178 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1849954 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 286346 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 286346 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 484951 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1397410 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2738433 22929899 ~ 22930205 (+) True G63905

Expression Profile