RNA id: XM_039804640.1


Basic Information

Item Value
RNA id XM_039804640.1
length 1292
RNA type mRNA
GC content 0.42
exon number 6
gene id psmd9
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20168720 ~ 20172092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGTAAACCGGAAGTACCATTCGGCTCTGGCTGGAGCTACGTACAGCCATGAAGATGACAGGGGAAAATAATGCTGAAAATTCAGAAATAACAATGGATGATGTCAAAAACTTAATTCAAAGGAAAGATGAAATTGAAGAACAGATAAAGGCTTATTACGATGTTTTGGAAGACCAATGTGTCGGAGTTGAAGGTCCCTTGGTTGACGCAGAGGGTTTCCCTAGAGCAGATGTTAATTTATACCAGATCAGGACAGCAAGACACAGTATTTCATGCCTGCAGAATGATCACAAGGCCATCATGGAGGAGATAGAAGAAGCCCTACACAAGCTGCATGCTCGAGAGAAAGCCAAGCGGGGAGGGGACGAGGCAGGAGACCAGGAGGAGGCGATGGAGCAACAGGtcactcttcctcctccctttgCACGGGTGGATGCTGTGACACAAGGCTCGCCTGCATGTGGAGCTGGGCTCAGAGTTGGTGATGAAGTCATTGAGTTTGGTTCTGTTAACACAGAGAACTTCCAGAACCTCCAGAATATTGCTTCTGTGGTACAACACAGTGAAGGGAAACCATTACGTGTCTCAGTCATCCGGGATGGccagaaagctcagatgagcctgACTCCACAGCGATGGTCAGGCAGAGGATTGCTGGGATGCAACATTGTTCCAATCCATCGATGATCACCATGACATTGTGCAGCATTTCAATTGTGAAACACCTTCCTCCACCTATGTTATGCCTGGATGGTTTCAAACTGACTTTGTACATGCTGCAGACATTTTCACCTGTTTATTTTCTCAATATTTGAATCCAAACTGGAAGTATTTTCTTTATACAAATGGGATATATGAAAATGAAGTGTCACAGTACTTCTTTTTAAGAGGCCATACTGAGTTTACTGAATAAACATGCTATCTTATACTACTCGGATTATATTCTTACACATTCGACTCTTGGCATTAGGAGTTTTAGCATCTTTCTCTCAGTAGCATGGATTCACTCAGCGAATGTCATTGCTTTATCTAGTGTGCAAGTGGTATATTTGGTGTAAGAGTGCCACCAGAGATTAATAGGGGGGTTAATTAATGATATCCATGACAAAATCTGAGTGGTTGTTAAAGTATCTTGCAGTGTTTTGATGTGATGAACTGACAATGAATGACTGGAGACTTATTAATTAATTTGACTACTTTAATCATTAAATGTTTATGTTCAACTCTTGGGGAAAAGATGACCTGTCGCATGTTTATTCCACATGTAATTAAAGATTTTGTATTAAGTGAA

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06693 PSMD9, RPN4; 26S proteasome regulatory subunit N4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 141554 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 141965 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 142972 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 150308 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 152059 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 220315 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 269619 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 270062 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 386248 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 393576 20565668 ~ 20566142 (+) True G63451
XM_039804633.1 mRNA upstream 561 20161997 ~ 20168159 (+) False LOC120561472
XM_039804632.1 mRNA upstream 561 20161999 ~ 20168159 (+) True LOC120561472
XM_039803900.1 mRNA upstream 58736 20083914 ~ 20109984 (+) False clip1a
XM_039804635.1 mRNA downstream 9092 20181184 ~ 20191466 (+) False LOC120561473
XM_039804637.1 mRNA downstream 9092 20181184 ~ 20191466 (+) False LOC120561473
XM_039804636.1 mRNA downstream 9625 20181717 ~ 20191466 (+) True LOC120561473
XM_039804634.1 mRNA downstream 10315 20182407 ~ 20191466 (+) False LOC120561473
XM_039804647.1 mRNA downstream 19827 20191919 ~ 20220630 (+) True LOC120561477
TU84360 other upstream 719770 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1487559 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1749130 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1752714 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1837490 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 305720 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 305720 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 504325 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1416784 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2757807 22929899 ~ 22930205 (+) True G63905

Expression Profile