RNA id: XM_039804653.1


Basic Information

Item Value
RNA id XM_039804653.1
length 2117
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120561479
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31122558 ~ 31124674 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATACGGGACTGCAGATAGAACATCCTCACAACTTTCATAGGAATGACCGGGAGCCATCTAAACGCTGTATTCAGTTCTCCATCCATTAACGGAGTTGAGACGCCATTACAGGCCGAAGGATCTCTACTATAAACACACTCATGAGTTGGATTGTAATCTGTAAATCAAAAGGGGCAGAGATTCGGTGAGTCTTGTTGTTAAAGAATAAATCACTTAACAGAGCAAATGGCGGAGAAAATTGCTCTTCTTGAAAGTTTCCTGAACTGCCATGTGTGTTCAGAGACTTTCAGTGACCCTGTGTCTCTGAGCTGCAGCCACAGCTTCTGTTCAAACTGCCTGCAAAAGTTCTGGGAACaagctaaaaacaaaaactgtccCATTTGTAAAACAAAGTCCTCCACGGATGAACCAGCAGTGAACTCTGCACTGAAGGAACTGGCTGACTCCTTTGCTGGGAGGCAGAAGAATGGTTCACCTgagatggaaaaagaaaaggagacagaggaagTTGTGTGTGTTCAACATCCAGAAGTCCCTTATTGGTTCTGTGAGGATGAAGATAGAGCTGTGTGTCCTGTCTGTGAGTTTTCTCTCCACCACGGTCACAAGGTGGTTCCTATAGAACTAGCAGTCAGTGAGCTGAAGGAGCAGCTGAAATCTGACTTGAAGTCTCTACAGGACAAGAGGGGCAGATACAAACAAGTGGAGAAAACATACGATGAAGTGATTCAACACTCCAAGAAGCAGCTGTTGTCCACAGAGAGGCAGATCAGAGCAGAGTTCAACAAGCTTCACCAGTTcctgaaagaggaagaggagtccaGACTGGCAGctctgagggaggaagaggagcaggaggGGAAGACTATCAGCAGAGAGATGAAGATGATTCAGGAGCAGATCTCCTCTCTGTCAGACAGTATCTCTGCTGTTGAAGAAGAGCTGCAGAAACACAACGTGCCGTTCCTCAGCAGTTATAAACCCACTCAGACCAGAGCCAGAGTCCAGTGCTCGCTGTCAGATCCACAGCTGGTCTCAGGAGCGCTGACAGATGTGGCCAAACATCTGGGCAACCTGTCCTTCAGAGTCTGGGAGAAGATGAGGGACGAGGTCCACTTCAGTCCTGTCattctggacccaaacactgcaAACCCCTGGCTTTATCTGTCTGATGATCTGACCAGTGTGAGACAGGGAGACACCAAGCAGCAGCTTCCTGACAATCCAGAGAGATGCACCAAATATACCATGCTTCTGGGCTCTGAGGGGTTCAGCTCAGGGAAACACAGctgggaggtggaggtgggagACCATCCTTACTGGTTTGTGGGTTTGGCTAAAGAGTCAGTGGAAAGGAAGGGAGAGTTACTTGCTTCACCAAAATATGGAATCTGGTGTTTATGGCATGATAATGGAAAATACGATAATGGAGCTGGTAAGCCCGTCAGAGTGAAGAAGAGTCTCCAGAGGATCAGAGTCCAGCTGGACTATGACCGGGGGGAGGTGTCCTTCTACAACCCTGAAGACAAGACCCACATCTGCACTCTCAGAGACActttcactgagaaactcttcccATTGTTCAGTATCGGAGCGGCTGGTGATGCTAAAACTGCTGATATCAGAATCTGTCAAACTGAGATTTCTCTGTTTTTGTCAGTTACTGACAATTCCAGTTAGTTCTTTTTAGGTGAAAATTGTGCATTTTAAAAGCAAATGAAGAAAATGTAGAGATCCGGGTAAAAGAAAAACCAAAATTTGATCTTTCAGAAAATTACATGATGGAACACATTCCTTGGTTGTTgtataatatacaatatatttcCAAAGCACAAAATTAGAAACTAAAGCTGAAATGTAGGTATTCGGCATGTAAAGCATTCTTGGCAAAATGGTGGATGTGGTTAGGACAAGTAGATTTCatgtgatatttttacttttcttttttcaaatgattAGCAACAACTTTAAGTTTGCATAAGAAAGGCTTCAATTTTAAATCATATAACCACAGAAAGCCTCATctcactttgttttcttttgacattttaaaatgacttccTTGTGTTTAATGGTGACTGGTTACCTTTTGTAAATATAATGTTCAGTTCCTTCA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12000 TRIM7; tripartite motif-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88228 lncRNA upstream 213088 30906356 ~ 30909470 (+) True G65958
TU88229 lncRNA upstream 213088 30906356 ~ 30909470 (+) False G65958
TU88230 lncRNA upstream 213088 30906356 ~ 30909470 (+) False G65958
TU88217 lncRNA upstream 284784 30754359 ~ 30837774 (+) True G65951
TU88147 lncRNA upstream 581719 30539817 ~ 30540839 (+) True G65890
TU88294 lncRNA downstream 5367 31130041 ~ 31154168 (+) True G66015
TU88378 lncRNA downstream 176836 31301510 ~ 31301746 (+) True G66072
TU88377 lncRNA downstream 186269 31310943 ~ 31311447 (+) True G66071
TU88374 lncRNA downstream 192902 31317576 ~ 31318474 (+) True G66069
TU88375 lncRNA downstream 192902 31317576 ~ 31318336 (+) False G66069
XM_039804196.1 mRNA upstream 647 31117825 ~ 31121911 (+) True si:dkey-174n20.1
XM_039802150.1 mRNA upstream 115261 30928746 ~ 31007297 (+) True znrf3
XM_039802151.1 mRNA upstream 115261 30928746 ~ 31007297 (+) False znrf3
XM_039802152.1 mRNA upstream 115261 30929789 ~ 31007297 (+) False znrf3
XM_039804029.1 mRNA upstream 229278 30857594 ~ 30893280 (+) True LOC120561064
XM_039804654.1 mRNA downstream 2186 31126860 ~ 31128760 (+) True LOC120561480
XM_039802031.1 mRNA downstream 112594 31237268 ~ 31241040 (+) True LOC120559964
XM_039803819.1 mRNA downstream 149224 31273898 ~ 31300445 (+) True hs3st1l2
XM_039803820.1 mRNA downstream 172730 31297404 ~ 31300445 (+) False hs3st1l2
XM_039803436.1 mRNA downstream 190625 31315299 ~ 31316422 (+) True LOC120560681
TU88223 other upstream 236393 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 544399 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 871039 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 872290 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 872318 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 684958 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 1001619 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 1197833 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 1240186 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 1447014 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile