RNA id: XR_005639402.1


Basic Information

Item Value
RNA id XR_005639402.1
length 653
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120560009
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8428953 ~ 8431230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTAGGGATAGTCATAATTTAATTGTAGATATCTATTATCAAGTTATAGATATCTTGAAATTAATTTTGATTAGAGATATGTGAAATTTGAGATATCTGTAACTTTCATTCTGCCTAgtcaaaatgtaattacagataTCTTGAATTTGAGTTTTGACTAGGCGAAATGACGTTGCAGAtatctgtatgtgtatgcaaATTAGGCCCGCATCCCACTTTAGGCGGAGCACCTGTTAACTGTTAACTTGTAATTAGCACTGATTAGCACCATGTCGGAGCAGCCAGAGGCCGAAGGAGTTTTTAATCGTCTTTTTAATGCTGCAGCCCGTGCAAGACAGGAGCTGGCAGCGAGAAATAATGATTCAACGTTACTTTCCACAACAAGACGACTATTTCGCCGGCAAGTTCATCGAGTTCGGGGAGGATCTGGTGGACGGAGGGAAAGCCCTATTTGGCAAGCAAAACTTTTCCTCCTTCCAGGGCCAGATAATGGTTTTTTACCTCCTACAAAAGAACTTGAGGAACTGGCTAAACTTGGATTAAGTAAATGAAAACCTGTGCATGAGTCAACAGAGGCCGGACGCACAAACTCAAAGATTGGGTTAAACTGGAGTTTATCTGAATTGAACAACTTTGTTTGCCAAAGCTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80748 lncRNA upstream 5210 8423189 ~ 8423743 (+) False LOC120560006
TU80747 lncRNA upstream 11103 8417642 ~ 8417850 (+) True G60147
TU80713 lncRNA upstream 56402 8372266 ~ 8372551 (+) True G60120
TU80698 lncRNA upstream 102000 8325053 ~ 8326953 (+) True G60109
TU80663 lncRNA upstream 115840 8302258 ~ 8313113 (+) True G60080
XR_005639401.1 lncRNA downstream 3511 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA downstream 5717 8436947 ~ 8437592 (+) False LOC120560008
TU80778 lncRNA downstream 47349 8478579 ~ 8478887 (+) True G60174
TU80781 lncRNA downstream 51665 8482895 ~ 8483122 (+) True G60177
TU80786 lncRNA downstream 160023 8591253 ~ 8591473 (+) True G60182
XM_039802097.1 mRNA upstream 1208 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 1208 8423712 ~ 8427745 (+) False LOC120560006
XM_039803747.1 mRNA upstream 26384 8331385 ~ 8402569 (+) True LOC120560868
XM_039803746.1 mRNA upstream 26384 8397481 ~ 8402569 (+) False LOC120560868
XM_039803748.1 mRNA upstream 26384 8399670 ~ 8402569 (+) False LOC120560868
XM_039802098.1 mRNA downstream 1722 8432952 ~ 8434672 (+) False LOC120560007
XM_039803055.1 mRNA downstream 33941 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 379324 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 430740 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 430740 8861970 ~ 8907724 (+) False slc4a5a
TU80548 other upstream 393592 8028192 ~ 8035361 (+) False cux2b
XR_005639609.1 other upstream 729702 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 730908 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 735744 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 738161 7690674 ~ 7690792 (+) True LOC120561492
XR_005639399.1 other downstream 307 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 307 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 13224 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 14388 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_246 other downstream 15550 8446780 ~ 8446851 (+) True trnaw-cca_4

Expression Profile