RNA id: XR_005639405.1


Basic Information

Item Value
RNA id XR_005639405.1
length 656
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id LOC120560032
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25839136 ~ 25843093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTCAGTAACCCAGTAGTTGGGTTAATGGTTTTGGACTGTGCCTTGATCTGAATAACCCAACCAATGATCATTTTAACCCAGTGGTTGGGTTACATTCAAGTTTGGGTTCCTCCTCCAacggtctttttcttttctccgaGGCGGGAGAACACTTTTGGAAACACTGAAGCGATTGAATATGGAGGACTTTGTTAAGCTAAAGTTAACAGAACGGCAACTTCTTGAGCTGATTGACACTTTTGCAGATTGTGCAGGACTTCGAGGTTCTTCATAAAGAGGCATCAGACTAAATCTTTGACCTGGAGGAGGTTCAGCGAGAAGCTTGTTCATGCGGCCCAGTGGGAGGGGTAGAAGCTCCACgtgcagacagagacagagtctTTGTCTCAAGgCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAGGTCTGATTCCACCTGCAGTCTTCAGGATGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTgTCGGAGCCAACATGGTGGAGTACCTTCAGGCAGCAGAGCAGGCCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCTCAGGCATTCACCGTTCCCAGTGGGCCGGCCCTGGAGCACGACAGCG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86515 lncRNA upstream 43695 25788457 ~ 25795441 (+) True G64607
XR_005639536.1 lncRNA upstream 91247 25713910 ~ 25747889 (+) True LOC120560927
TU86493 lncRNA upstream 139352 25697063 ~ 25699784 (+) True G64592
TU86472 lncRNA upstream 175751 25663027 ~ 25663385 (+) True G64578
TU86363 lncRNA upstream 283355 25552939 ~ 25555781 (+) True G64495
TU86551 lncRNA downstream 72851 25915944 ~ 25916892 (+) True G64643
TU86566 lncRNA downstream 74094 25917187 ~ 25917476 (+) True G64657
TU86567 lncRNA downstream 74672 25917765 ~ 25918093 (+) True G64658
TU86572 lncRNA downstream 79070 25922163 ~ 25922388 (+) True G64663
TU86549 lncRNA downstream 82994 25926087 ~ 25928592 (+) False LOC120560359
XM_039802030.1 mRNA upstream 55099 25774378 ~ 25784037 (+) True LOC120559963
XM_039802203.1 mRNA upstream 76230 25757088 ~ 25762906 (+) True LOC120560092
XM_039802204.1 mRNA upstream 76230 25757088 ~ 25762906 (+) False LOC120560092
XM_039804178.1 mRNA upstream 142560 25684964 ~ 25696576 (+) True LOC120561182
XM_039803612.1 mRNA upstream 179675 25655685 ~ 25659461 (+) True LOC120560772
XM_039802136.1 mRNA downstream 71186 25914279 ~ 25915577 (+) True LOC120560031
XM_039802758.1 mRNA downstream 83007 25926100 ~ 25928596 (+) True LOC120560359
XM_039802766.1 mRNA downstream 96683 25939776 ~ 25949337 (+) False LOC120560362
XM_039802763.1 mRNA downstream 96771 25939864 ~ 25949337 (+) False LOC120560362
XM_039802770.1 mRNA downstream 96771 25939864 ~ 25949337 (+) False LOC120560362
TU86491 other upstream 142566 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1004505 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1004516 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2145845 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2908931 22929899 ~ 22930205 (+) True G63905
TU86550 other downstream 71289 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 569776 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 651242 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 651242 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 651242 26494335 ~ 26496261 (+) False c6h22orf39

Expression Profile