RNA id: XR_005639454.1


Basic Information

Item Value
RNA id XR_005639454.1
length 2172
lncRNA type intronic
GC content 0.47
exon number 3
gene id LOC120560250
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43558378 ~ 43562599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACTCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGACAGGTACCAGAACCACTCTAACAGACAGGTACCAGAACCACCCTAACAACAGAAAGgTACCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGCAGAACCACCCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGCAGAACCACTCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGAAAGGTACCATCAGAACCACACTAACAACAGACAGGTACCAGAACCACTCTAACAACAGACAGGTACCACCAGAACCACACTAACAACAGACAGGTACCAGCAGAACCACCCTAACAACAAAAGGTACCAGAACAACCCTAACAACAGATAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGCAGAACCACCCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACTCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGAGAGGTACCATCAGAACCACCCTATCAACAGACAGGCACCAACAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGATAGGTACCAGAACCACCCTAACAACAGACAGGTACCAGCAGAACCACACTAACAACAGACAGGTACCAGAACCACCCTAACAACAGACAGGTACCAGCAGAACCACCCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGAAAGGTACCATCAGAACCACACTAACAACAGACAGGTACCAGAACCACTCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGGAAAGTACCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGAAAGGTACCATCAGAACCACTCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGATAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGCAGAACCACCCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGAAAGGTACCAGCAGAACCACTCTAACAACAGACAGGTACCAGAACCACCCTAACAAGAGAAAGGTACCATCAGAACCACACTAACAACAGACAGGTACCATAACCACTCTAACAACAGACAGGTACCACCAGAACCACACTAACAACAGACAGGTACCAGCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGATAGGTACCAGAACCACCCTAACAACAGACAGGTACCAGAACCACCATAACAACAGAAAGGTAACAGAACCACCCTAACAACAGACAGGTACCATCAGAACCACTCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGGAAGGTACCAGAACCACCCTAACAACACAAAGGTACCATCAGAACCACTCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGACAGGTACCATCAGAACCACTCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGGAAGGTACCATAACCACCCTAACAACACAAAGGTACCATCAGAACCACCCTAACAACAGGAAGGTACCAGAACCACCCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGACAGGTACCATCAGAACCACTCTAACAACAGACAGGTACCAGAACCACCCTAACAACAGACAGGTACCAGAACCACTCTAACAACAGACAGGTACCATCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGACAGTTACCATCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGACAGTTACCATCAGAACCACCCTAACAACAGAAAGGTACCAGAACCACCCTAACAACAGACAGGTACCAGAACCACTCTAACAACAGACCAGAACCTCCCTAACAACAGAAAGGTACCATCAGAACCTCCCTAACAACAGATATAGTTTAACATGTCTCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92969 lncRNA downstream 946 43556300 ~ 43557432 (-) True G69376
TU92970 lncRNA downstream 946 43556300 ~ 43557432 (-) False G69376
XR_005639457.1 lncRNA downstream 28301 43528305 ~ 43530077 (-) True LOC120560252
TU92964 lncRNA downstream 47008 43509948 ~ 43511370 (-) True G69372
TU92962 lncRNA downstream 73859 43484110 ~ 43484519 (-) True G69371
TU92972 lncRNA upstream 2840 43565439 ~ 43566214 (-) True G69378
TU92973 lncRNA upstream 22322 43584921 ~ 43585345 (-) True G69379
TU93001 lncRNA upstream 87546 43650145 ~ 43650465 (-) True G69404
TU93066 lncRNA upstream 177257 43739856 ~ 43804845 (-) False G69454
TU93067 lncRNA upstream 180681 43743280 ~ 43755105 (-) True G69455
XM_039802526.1 mRNA downstream 6390 43531233 ~ 43551988 (-) True phf19
XM_039802458.1 mRNA downstream 30260 43480961 ~ 43528118 (-) True LOC120560199
XM_039802492.1 mRNA upstream 27445 43590044 ~ 43651535 (-) True LOC120560219
XM_039802457.1 mRNA upstream 103188 43665787 ~ 43709261 (-) False LOC120560198
XM_039802456.1 mRNA upstream 103188 43665787 ~ 43709261 (-) True LOC120560198
XM_039804563.1 mRNA upstream 247030 43809629 ~ 43821302 (-) True endog
XM_039803759.1 mRNA upstream 269798 43832397 ~ 43868090 (-) False LOC120560874
TU92966 other downstream 11820 43541243 ~ 43546558 (-) False phf19
TU92928 other downstream 177779 43371767 ~ 43380599 (-) True G69356
TU92812 other downstream 307083 43250758 ~ 43251295 (-) False LOC120561119
TU92775 other downstream 339484 43211019 ~ 43218894 (-) True G69249
TU92756 other downstream 379407 43173165 ~ 43178971 (-) False pomt1
TU93018 other upstream 117877 43680476 ~ 43709236 (-) False LOC120560198

Expression Profile