RNA id: XR_005639467.1


Basic Information

Item Value
RNA id XR_005639467.1
length 661
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120560273
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21608823 ~ 21620711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATAGTGGTGGCTGGGCCCTGTGCTGACCGACCAGCAGGAGTGGGCAGTGGTGGAAATGTAGAGGGCCAGGAATGATAAACGGCTGTCGGAAATGAAGCAAGGCAATTGAGGAGAACAATGACACCTTTGCCAGCCTGCATATCCATCTCATAAATACAGGAGTCTCTGTAGCTCCGTCGGGCATGGACACTTACTCCATCCATTTGTCCgacgcatgcgcaaaagaacaacaCAGAGCAAAGCGTCCTCTACTTCACCACCCAGGACCTTGATGTTGGACGGCCCCAACAGAAGCATCCCAAGTCTGCAAACCATCTGCCCTTGCAGCTGCAGCTTCACACCAGGCCTGAGGGTTAAGAGCCAACAATCCCAATGGAAAATATAGCTTCCTTTTTCAAAAATATGGTACAAAAGTTTCAGAAAACCTATTGTGTTTTCTTAATTCTTGAGAAACTGGCAGTGACATAGCAGTAATGTGTTTATTACAGTAACTTTATATTAACATATAAATAAGTTACAGCAGTCCCTATGTTTCCCTTAGCTTCCATTAACTTGAACACATTTTTCGTTGTTAAAACTAGAGACACAGTTGCTAGAAAGATGTAACCAAAACACGTCGgtagcagcaaaaaaacaccacaatgCAGTTCAATGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85261 lncRNA upstream 121785 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 124157 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 261306 21346367 ~ 21347517 (+) True G63576
TU85165 lncRNA upstream 294732 21312753 ~ 21314091 (+) True G63545
TU85120 lncRNA upstream 386172 21164816 ~ 21222651 (+) True G63511
TU85373 lncRNA downstream 224121 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 254734 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 511173 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1283324 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1366470 22987181 ~ 22988040 (+) True G63914
XM_039803635.1 mRNA upstream 9534 21588876 ~ 21599289 (+) True LOC120560787
XM_039803638.1 mRNA upstream 9670 21588876 ~ 21599153 (+) False LOC120560787
XM_039803636.1 mRNA upstream 9789 21588876 ~ 21599034 (+) False LOC120560787
XM_039803637.1 mRNA upstream 9821 21588876 ~ 21599002 (+) False LOC120560787
XM_039802852.1 mRNA upstream 150476 21428343 ~ 21458347 (+) True agtpbp1
XM_039802564.1 mRNA downstream 6301 21627012 ~ 21641536 (+) True hnrnpk
XM_039802569.1 mRNA downstream 6301 21627012 ~ 21641536 (+) False hnrnpk
XM_039802568.1 mRNA downstream 6301 21627012 ~ 21641536 (+) False hnrnpk
XM_039802566.1 mRNA downstream 6407 21627118 ~ 21641536 (+) False hnrnpk
XM_039802567.1 mRNA downstream 6846 21627557 ~ 21641536 (+) False hnrnpk
XR_005639510.1 other upstream 10024 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 930907 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1119985 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1119985 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2159873 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1309188 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2071951 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3203007 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3203008 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 4064261 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile