RNA id: XR_005639469.1


Basic Information

Item Value
RNA id XR_005639469.1
length 436
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id LOC120560290
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8597542 ~ 8598388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCACACTGGACGGTATTCTAGGCCACCGTCTAGCATACTCGAGCCACCGCGTTCTGGGAGACGATCGTCTGCTCCGAGAACACTCCACCATTGGATGAGAGTCTTCAAGCTACTGCACTAGAACCTGTGGACAGTTTCCTGCTGGATCCAGTCGCCCCTAACACAAGACCCAGCACCAGTGCACCCAGCACCAGTTTCTGTGTCGCTCCTGTTGGCACCAGTACCCCCTGTCGCCTTACACCAGCAAAGAGAAAGAGGCCTGATTCCAGTATCCTTTTAATGGTGGAAAACCTGCTGGATTCAGATGCTGAACTGTAGTGATTCCCACTATGGTGAAATACTGCAATTTCTTAAAGGCCAAAACAGAGGCTGAGGAGCGTGCAGCTTTGGTGGCAAGGGAGGAAGAGATGAAGCGCTTCAAGGCTCACTGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80786 lncRNA upstream 6069 8591253 ~ 8591473 (+) True G60182
TU80781 lncRNA upstream 114420 8482895 ~ 8483122 (+) True G60177
TU80778 lncRNA upstream 118655 8478579 ~ 8478887 (+) True G60174
XR_005639401.1 lncRNA upstream 159944 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA upstream 159950 8436947 ~ 8437592 (+) False LOC120560008
TU80794 lncRNA downstream 48833 8647221 ~ 8647449 (+) True G60189
TU80806 lncRNA downstream 133325 8731713 ~ 8731922 (+) True G60201
TU80828 lncRNA downstream 186265 8784653 ~ 8784920 (+) True G60223
TU80840 lncRNA downstream 235239 8833627 ~ 8856430 (+) True G60229
TU80844 lncRNA downstream 255885 8854273 ~ 8929828 (+) True G60232
XM_039803055.1 mRNA upstream 115364 8465171 ~ 8482178 (+) True LOC120560486
XM_039802098.1 mRNA upstream 162870 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 169797 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 169797 8423712 ~ 8427745 (+) False LOC120560006
XM_039803748.1 mRNA upstream 194973 8399670 ~ 8402569 (+) False LOC120560868
XM_039803061.1 mRNA downstream 212166 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 263582 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 263582 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 323895 8922283 ~ 8933253 (+) True zgc:113436
XM_039803657.1 mRNA downstream 341441 8939829 ~ 8965106 (+) True LOC120560802
unassigned_transcript_250 other upstream 143672 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 145998 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 148327 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 149526 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 150691 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 614854 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 1328562 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 1328661 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 1328661 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 1328719 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile