RNA id: XR_005639470.1


Basic Information

Item Value
RNA id XR_005639470.1
length 357
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120560300
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23219850 ~ 23245368 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGATGCTTCATCACAGAACTAGAAGTGAGGAGGAGAGCGTGGACACCCCGGTCATAAAGCACTATTGGGAGCACGCCTATTTATAGCTGACTaccgccaccaccaccaccctgcAGGCTGAAAGTCACACCAGGAGATTTTGGGAGTGAAGTCCTTGAGCTACTCTGTCAATGCGAAGCATTGCAGTGACAAGTTTGCAGATGAGGTTGGTCACTGTGAAGACGCACTGCACCGTTCCCTACGCTAAAGCACAAGACTACATCCTTCAAAGACAAATAACTGAAACATTTGCCAAGAGCCCTGCCTACTCCATGAATGAGGAAAAAGACACTGGAAAAGAAGGAAGGGTAACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85631 lncRNA upstream 231810 22987181 ~ 22988040 (+) True G63914
TU85584 lncRNA upstream 313884 22904035 ~ 22905966 (+) True G63872
TU85491 lncRNA upstream 1069726 22131884 ~ 22150124 (+) True G63792
TU85374 lncRNA upstream 1344163 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 1374712 21844832 ~ 21845138 (+) True G63714
TU85721 lncRNA downstream 29552 23274920 ~ 23281109 (+) True G63976
TU85782 lncRNA downstream 185322 23430690 ~ 23432473 (+) True G64026
TU85783 lncRNA downstream 186113 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA downstream 189690 23435058 ~ 23442981 (+) True LOC120560908
TU85820 lncRNA downstream 280279 23525647 ~ 23562232 (+) False LOC120560905
XM_039803246.1 mRNA upstream 328831 22884588 ~ 22891019 (+) True elac1
XM_039803244.1 mRNA upstream 335976 22862584 ~ 22883874 (+) True me2
XM_039803245.1 mRNA upstream 335976 22862584 ~ 22883874 (+) False me2
XM_039804108.1 mRNA upstream 357977 22840502 ~ 22861873 (+) True mapk4
XM_039802625.1 mRNA downstream 11893 23257261 ~ 23273702 (+) True ndufaf2
XM_039802627.1 mRNA downstream 37711 23283079 ~ 23330548 (+) True LOC120560302
XM_039802628.1 mRNA downstream 37712 23283080 ~ 23330548 (+) False LOC120560302
XM_039802630.1 mRNA downstream 37713 23283081 ~ 23330548 (+) False LOC120560302
XM_039804011.1 mRNA downstream 107582 23352950 ~ 23354264 (+) True LOC120561043
TU85622 other upstream 289645 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 1621051 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2541934 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2731012 20477812 ~ 20488838 (+) False wdr31
TU85875 other downstream 447294 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 1578350 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1578351 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2439604 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2669014 25914382 ~ 25915529 (+) False LOC120560031

Expression Profile