RNA id: XR_005639493.1


Basic Information

Item Value
RNA id XR_005639493.1
length 279
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120560596
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10701819 ~ 10702517 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGTGAACCTGGATATCTTTGACGCTGCTGTGTCATTTGTTAATGTAAATAACAACCACTGGCGTTTCGTGTACCTTCATGCGCCTTTAAGGACTTTATTTGTGATGGATCCTGCCACTGCAGAACAAGATTTTCACCTCTCCATAACTGCTGTTCAGCGTTACAACAGCTACTTTCGGATGCGGCAGAATGTAATTGGGAAACAGGTGTGGAGCAGTATAAAGTGGAAAGCTGCAACTACTCCACACCCAATCCAAAAAGATTCCACAAGCTGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81216 lncRNA upstream 132933 10568306 ~ 10568886 (+) True G60533
TU81152 lncRNA upstream 335095 10354292 ~ 10366724 (+) True G60479
TU81148 lncRNA upstream 338959 10342427 ~ 10362860 (+) True G60475
TU81146 lncRNA upstream 359439 10342099 ~ 10342380 (+) True G60474
TU81124 lncRNA upstream 611705 10073298 ~ 10090114 (+) True G60453
XR_005639494.1 lncRNA downstream 114 10702631 ~ 10703434 (+) True LOC120560597
TU81259 lncRNA downstream 33204 10735721 ~ 10736180 (+) True G60574
TU81260 lncRNA downstream 40135 10742652 ~ 10742886 (+) True G60575
TU81262 lncRNA downstream 68029 10770546 ~ 10770824 (+) True G60577
TU81296 lncRNA downstream 110262 10812779 ~ 10814069 (+) False G60607
XM_039803877.1 mRNA upstream 720765 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA upstream 720765 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA upstream 720765 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA upstream 731914 9927049 ~ 9969905 (+) False LOC120560959
XM_039803070.1 mRNA upstream 1326073 9368199 ~ 9375746 (+) True LOC120560494
XM_039804112.1 mRNA downstream 23921 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA downstream 23922 10726439 ~ 10746953 (+) False LOC120561142
XM_039804113.1 mRNA downstream 45600 10748117 ~ 10752440 (+) False LOC120561144
XM_039802043.1 mRNA downstream 470502 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 470557 11173074 ~ 11188211 (+) False marveld2b
XR_005639542.1 other upstream 720765 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other upstream 720765 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other upstream 720830 9927107 ~ 9980989 (+) False LOC120560959
TU81099 other upstream 748580 9926950 ~ 9953239 (+) False LOC120560959
unassigned_transcript_251 other upstream 1488506 9213242 ~ 9213313 (+) True trnaq-cug_4
XR_005639562.1 other downstream 23929 10726446 ~ 10746948 (+) False LOC120561142
XR_005639564.1 other downstream 45599 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other downstream 45599 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other downstream 45599 10748116 ~ 10752440 (+) False LOC120561144
TU81647 other downstream 1223666 11926183 ~ 11926601 (+) True G60897

Expression Profile